Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq872 98.7 1e-15 seq2250 95.1 2e-14 seq356 86.0 9e-12 >seq872 Length=30969 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | ||| |||||||| ||||||||||| || Sbjct 26047 CCACCACGAAGACGGAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGAC 26106 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || || || || || ||||| ||||| | ||||||||| || || Sbjct 26107 AAAGTACGGCCATCCTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGG 26166 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 26167 ATTCCTTCCTTATCTTG 26183 >seq2250 Length=3934 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/228 (67%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||||||| | |||||||| || | ||||||||| || || || ||||| || Sbjct 94 CCACCTCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAT 153 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || | |||||| ||||| ||||| | | ||||| || || || Sbjct 154 AAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGGG 213 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| ||||| || ||| || ||| |||||| Sbjct 214 ATTCCTTCCTTATCCTGAATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGATTCTACC 273 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || ||||| ||||| |||| || |||| ||| || |||||| Sbjct 274 TCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCATT 321 >seq356 Length=31527 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || ||||| || | |||||||| || || || || || ||| Sbjct 31138 CCACCACGGAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAA 31079 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || ||||| || || || || || | |||||||||||| || || Sbjct 31078 AGAGTACGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGG 31019 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 31018 ATTCCTTCCTTATCCTG 31002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743453934058240