Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq356 107 1e-18 seq2250 82.4 5e-11 >seq356 Length=31527 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || |||| |||| ||| | ||| ||| ||||| ||||||||||| || Sbjct 31138 CCACCACGGAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAA 31079 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||| ||||| || ||||| || || | ||||| || ||| Sbjct 31078 AGAGTACGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGG 31019 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||||||||| | | | || ||||||| || || || Sbjct 31018 ATTCCTTCCTTATCCTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACC 30959 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || | |||||||| || ||||| | ||||| ||||| |||||||| |||| Sbjct 30958 TCGAGGGTGATGGTCTTACCGGTTAAGGTTTTAACAAAAATCTGCATGGCTC 30907 >seq2250 Length=3934 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| | |||| ||| ||||| |||||||| || || | |||| | || || Sbjct 112 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGATAAAGTACGGCCATCTTCA 171 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | || || || |||||||| || ||||||||||| || | | ||||| || Sbjct 172 AGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGA 231 Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360 ||||| ||||| | || | | || | || | ||||| || || | || || || || Sbjct 232 ATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGATTCTACCTCAAGGGTAATTGTCTTA 291 Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || || ||||| || || || |||||||| ||| Sbjct 292 CCAGTTAGAGTCTTAACGAAAATCTGCATTGCT 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323041299780320