Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq265 183 3e-41 >seq265 Length=13576 Score = 183 bits (202), Expect = 3e-41 Identities = 559/858 (65%), Gaps = 17/858 (2%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || || || ||||| || | ||| ||||||||||| || || || | | ||||| | Sbjct 3996 TTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTGCATGGAAATCATA 3937 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| || || || || || |||| ||| | || ||| ||||||| | || Sbjct 3936 TCCATGAAGTCGAATGGGTTGATTGACTTATAATGCTTTTCGAATCCCAAAGAGACTAAC 3877 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 || | ||| || || || || ||||| || ||| | ||| |||||| || || | Sbjct 3876 AAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGTTCATACCAATCAGA 3817 Query 16124 TTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 | ||||| | | || |||||||| | || || || || || ||| ||| || Sbjct 3816 G-AGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAGCATCAGTGACGAT 3758 Query 16183 ATCTCTTACTACACTATTTAACGGA---GGGTT--TAATAAGTG-TTTAAACATTATACA 16236 | | | || || | | || || ||| ||| ||| |||| | || Sbjct 3757 GGAT------AGAATAGTTTCCTGGCTGGGCTTGTTAACAAGGCATTTGAACAACAAGCA 3704 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 | |||| || || | ||| ||||| | | || ||||||||||||||||| | || Sbjct 3703 ACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAAATGTCAATCC 3644 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| || || || || || | |||||| || || ||||| || ||| ||||| || Sbjct 3643 GGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCACTGAAGAAGAT 3584 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 || ||||| || || || |||||| ||| ||| | || | | || || Sbjct 3583 TCCCTCAACAACGCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTGGAGTCATCGAT 3524 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 ||||| |||||||| || || | ||| | ||| || || | | ||| ||||| Sbjct 3523 CCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCGACTGCGTTAAA 3464 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 | | | | | || | ||||| ||||| ||||| || | | | |||||||| Sbjct 3463 AAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATAGAGTACATTTC 3404 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 || || || || || |||||| || ||||| || |||||||| || | || || Sbjct 3403 GCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCCTCAGGGATCTG 3344 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 ||||||| ||| | | | || |||||||| ||||||||||| || ||||| || Sbjct 3343 GACTTCAGTTCCAAAGTTGGCAACCAAATTTTCGTTGACTATTCCATCACTGGCTGCGAA 3284 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT---TTTAACCAGTC 16713 ||| ||||| |||| || |||||| | |||||||||| | ||| ||| ||||| Sbjct 3283 AAATGCAAGAATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAGTTTATTTTCCCAGTG 3224 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 || | |||||||| || ||||| |||||||| || || | |||||||| Sbjct 3223 CTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCTGGCTTCGGCCTTTTT 3164 Query 16774 ATACATTTTCCATATGTC 16791 |||||||| ||| || || Sbjct 3163 ATACATTTGCCAAATCTC 3146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462466922424200