Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2250 89.7 4e-13 >seq2250 Length=3934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTT 45168 |||||||| | | ||||||||||| || || |||||||| |||||||| || | | Sbjct 94 CCACCTCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAT 153 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 | | || | || || |||||||| || ||||| || | ||||| ||||| || || Sbjct 154 AAAGT-ACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGG 212 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| ||| ||| || ||||| || | | |||| | || || Sbjct 213 GATTCCTTCCTTATCCTGAATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGATTCTAC 272 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | |||||| ||||| || || |||||||| || || || ||||| Sbjct 273 CTCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395037657608737