Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq356 118 8e-22 >seq356 Length=31527 Score = 118 bits (130), Expect = 8e-22 Identities = 172/242 (71%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 18084 TTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 || |||||||| | || || || ||||| | |||| ||| || || ||||| || || Sbjct 31152 TTCTCTTTTTGGCA-CCACCACGGAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGG 31094 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | | || | |||||||||||| || || || ||||||||||| Sbjct 31093 ATGTTGTAGTCAGAAAGAGTACGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTT 31034 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| ||| | ||||||||||| || | ||||||||| | | | | || Sbjct 31033 TGCTGATCTGGGGGGATTCCTTCCTTATCCTGGATCTTTTGCTTGACGTTTTCGATAGAA 30974 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || | ||| || | ||||||| | || ||||| || ||||| |||||||| ||| Sbjct 30973 TCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTAACAAAAATCTGC 30914 Query 18324 AT 18325 || Sbjct 30913 AT 30912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379307952480765