Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq265 138 1e-27 seq2250 120 3e-22 seq872 102 7e-17 >seq265 Length=13576 Score = 138 bits (152), Expect = 1e-27 Identities = 468/726 (64%), Gaps = 5/726 (1%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | ||||| |||||||| ||||| || ||||| ||||||||||| || Sbjct 3146 GAGATTTGGCAAATGTATAAAAAGGCCGAAGCCAGCTTCTGGACTGTCGAAGAAGTTGAT 3205 Query 57627 CTGTCTAAGGAT-CTGAGCGATTGGGA---TTCCCTCAAAGAATCTGAGAGAAATTTTAT 57682 | ||| |||| | ||| | ||||| | || | || || ||| |||||| Sbjct 3206 TTATCTCAGGACACCCAGC-ACTGGGAAAATAAACTAACTGATAACGAAAGATTTTTTAT 3264 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 || || | | || |||||||| || ||||| || || ||||| |||||||| | Sbjct 3265 CAAGAACATTCTTGCATTTTTCGCAGCCAGTGATGGAATAGTCAACGAAAATTTGGTTGC 3324 Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 | ||| | ||||| || | | ||||| ||||| || || || || || | Sbjct 3325 CAACTTTGGAACTGAAGTCCAGATCCCTGAGGCTAGATGTTTCTATGGCTTCCAGATAAT 3384 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAA 57862 || |||||| | || |||||||| || | | || ||||| || | || || || Sbjct 3385 GATAGAAAACATCCACAGCGAAATGTACTCTATGTTGATTGATACCTATATCAAAGATAA 3444 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 || |||| | || || ||||| ||| || || || ||| |||||||| Sbjct 3445 TGAGGAGAGAGACTTCCTTTTTAACGCAGTCGCAAATATCCCATGTATCAAAAAGAAGGC 3504 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGC 57982 | ||| || | ||||||| | | ||| | |||| ||||| | ||| Sbjct 3505 TAATTGGGCACTGGAATGGATCGATGACTCCAGCAAAAGTTTCGGAGAGAGATTGGCCGC 3564 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 ||| || || || || || ||||| || ||||| || || |||||| | || Sbjct 3565 CTTCTGCGTTGTTGAGGGAATCTTCTTCAGTGGGTCTTTTGCTGCCATCTTTTGGCTCAA 3624 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| || || || |||||||| |||| ||| ||||||||||| | || |||||||| Sbjct 3625 GAAGCGTGGTCTTATGCCCGGATTGACATTTTCAAACGAGTTGATTTGCCGAGACGAGGG 3684 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGA 58162 ||||| || || |||| ||| | ||| | | |||| || || || | | ||| Sbjct 3685 ACTCCACACAGACTTTGGTTGCTTGTTGTTCAAATGCCTTGTTAACAAGCCCAGCCAGGA 3744 Query 58163 TCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGC 58222 || | ||| |||| || || |||| ||| || | |||||| | ||||| | Sbjct 3745 AACTATTCTATCCATCGTCACTGATGCTGTCGTGATTGAGCAAGAGTTTTTAACCGACTC 3804 Query 58223 CCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGT 58282 ||| || | || | |||||||||| || |||||| | || || ||||| || Sbjct 3805 CCTCCCCTGCTCTCTGATTGGTATGAACAGTGTCCTGATGTGCCAATATATCGAGTTCGT 3864 Query 58283 TGCCGA 58288 ||||| Sbjct 3865 AGCCGA 3870 >seq2250 Length=3934 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || || ||| | || || ||| | || Sbjct 320 ATGCAGATTTTCGTTAAGACTCTAACTGGTAAGACAATTACCCTTGAGGTAGAATCTTCT 261 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| |||| || ||| |||||||| | || || |||||| Sbjct 260 GACACTATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAAGGAATCCCACCAGACCAG 201 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| ||||| | ||||| ||| | ||||| ||| Sbjct 200 CAGCGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTTTATCTGATTACAAC 141 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| |||||||| ||||| | | || || || |||| Sbjct 140 ATCCAGAAGGAATCTACTCTTCACTTGGTATTGCGTCTTAGAGGTGGTA 92 >seq872 Length=30969 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||||| | ||||| ||||| || || || || || || || || || ||| |||| || Sbjct 26282 GAATCTAGAATGCAGATTTTTGTCAAAACACTAACTGGTAAGACCATTACCCTCGAGGTC 26223 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 || | ||||| |||||| || || |||| ||| || |||||||| | || Sbjct 26222 GAGTCTTCCGATTCCATCGAAAATGTTAAGCAGAAAATCCAAGATAAGGAAGGAATCCCC 26163 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 || || ||||| ||| | || || || || || |||||||| || ||| || Sbjct 26162 CCAGATCAGCAACGTTTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGTACTTTGTCT 26103 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || ||||||||||| ||||||||| |||| || Sbjct 26102 GATTATAATATCCAAAAAGAATCCACTCTTCATTTGGTCCT 26062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445722954492240