Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq265 316 3e-81 >seq265 Length=13576 Score = 316 bits (350), Expect = 3e-81 Identities = 627/914 (69%), Gaps = 22/914 (2%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| ||||| || ||||| |||| || || || || || ||||| || || || | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 || || || | |||||||| || || || ||| | || ||| |||| ||||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGACTTATAATGCTTTTCGAATCC 3890 Query 33398 CAATTCAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 ||| ||| | ||| | ||| || ||||| || |||||| ||||| ||| | Sbjct 3889 CAAAG-AGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGT 3831 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| || || || || || | | || | ||| ||||| ||||| || | Sbjct 3830 TCATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAG 3771 Query 33517 CATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATG--TTTAAA 33574 ||| || | || || || ||||| | || || ||| | || | ||| || Sbjct 3770 CATCAGTGACGATGGATAGAATAGTTTCCTGGCTGGGCT--TGTTAACAAGGCATTTGAA 3713 Query 33575 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAA 33634 || ||| || | || || ||| || |||||||||| | ||| || ||||| ||||| Sbjct 3712 CAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAAA 3653 Query 33635 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGA 33694 || | ||||||||| || |||||||| || |||||||| |||| ||| || || || Sbjct 3652 TGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCACT 3593 Query 33695 AAAGAAGATTCCTTCTACTGCAGCA-AAGGCAATAAGTCTCTCTCCATAACCGGCGCTG- 33752 ||||||||||| || || | ||| ||||| | ||||||||| ||| |||| Sbjct 3592 GAAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTGG 3534 Query 33753 --TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 |||| ||||| | | ||||||| ||||||||||| | ||| || || || | | Sbjct 3533 AGTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCGA 3474 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 || ||||| || ||| | | || | | ||||||| | ||| ||||| ||||| | | Sbjct 3473 CTGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATAG 3414 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||||||| || |||||||| || ||||| || || |||||||||||||||| Sbjct 3413 AGTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCCT 3354 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCATC 33988 | | ||||| ||||| || | ||| ||| | | |||||||| || ||||||||||| Sbjct 3353 CAGGGATCTGGACTTCAGTTCCAAA--GTTGGCAACCAAATTTTCGTTGACTATTCCATC 3296 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTT--ATAAAATATTTTTCGTCTGGTGTTAGT 34046 ||||||||| ||||| || || | ||||| | |||||| || |||||| |||||| Sbjct 3295 ACTGGCTGCGAAAAATGC-AAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAGT 3238 Query 34047 TTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103 ||||| ||| | | | | || | ||||| ||| |||||||| || ||||| || Sbjct 3237 TTATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCTG 3178 Query 34104 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAAT 34163 || || |||||||||||||| | ||| || || || | | |||||||| | ||| || Sbjct 3177 GCTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAAC 3118 Query 34164 CTATTTGGATTTGG 34177 || ||||| || || Sbjct 3117 CTGTTTGGGTTGGG 3104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629756216402160