Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq265 188 7e-43 >seq265 Length=13576 Score = 188 bits (208), Expect = 7e-43 Identities = 391/575 (68%), Gaps = 18/575 (3%) Strand=Plus/Minus Query 11651 CCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttt 11710 || ||||||| | || | || || |||||||| ||||||||||| | || || || Sbjct 3684 CCCTCGTCTCGGCAAATCAACTCGTTTGAAAATGTCAATCCGGGCATAAGACCACGCTTC 3625 Query 11711 tttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCA-AA 11769 || | |||||| || |||||||| || ||| ||||| |||||||| ||| | ||| || Sbjct 3624 TTGAGCCAAAAGATGGCAGCAAAAGACCCACTGAAGAAGATTCCCTCAACAAC-GCAGAA 3566 Query 11770 TGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA------TATCCATTTTCTGGCCCA 11823 || | | ||| ||||| | || | ||||| || ||||||| ||||| Sbjct 3565 GGCGGCCAATCTCTCTCC-GAAAC--TTTTGCTGGAGTCATCGATCCATTCCAGTGCCCA 3509 Query 11824 ATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTC 11883 || ||| |||||||| | ||| || || | | ||||||| ||| | | | | || Sbjct 3508 ATTAGCCTTCTTTTTGATACATGGGATATTTGCGACTGCGTTAA--AAAGGAAGTCTCTC 3451 Query 11884 T--ATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTT 11941 | ||||||| | | ||| ||||| || || | | |||||||| || || ||| Sbjct 3450 TCCTCATTATCTTTGATATAGGTATCAATCAACATAGAGTACATTTCGCTGTGGATGTTT 3391 Query 11942 TCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAA 12001 || || ||| || || ||||||||||||| ||||| | ||| || || | Sbjct 3390 TCTATCATTATCTGGAAGCCATAGAAACATCTAGCCTCAGGGATCTGGACTTCAGTTCCA 3331 Query 12002 AATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATA 12061 || | | | ||||| || || || || |||||||| | ||| |||||||| || || Sbjct 3330 AAGTTGGCAACCAAATTTTCGTTGACTATTCCATCACTGGCTGCGAAAAATGCAAGAATG 3271 Query 12062 TGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA---TCCCAATCATCTAAATCTTTT 12118 | || ||||| || |||||| | ||||| |||| ||||| | | || | Sbjct 3270 TTCTTGATAAAAAATCTTTCGTTATCAGTTAGTTTATTTTCCCAGTGCTGGGTGTCCTGA 3211 Query 12119 GATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAG 12178 |||||||| |||||||| || ||||| || || || | | | ||||||||||| ||| Sbjct 3210 GATAAATCAACTTCTTCGACAGTCCAGAAGCTGGCTTCGGCCTTTTTATACATTTGCCAA 3151 Query 12179 ATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || || || |||| || ||||| | ||||||||| Sbjct 3150 ATCTCGTGCCACTTTATTGGGAACAGAACGAACCT 3116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468479136401680