Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq265 320 2e-82 >seq265 Length=13576 Score = 320 bits (354), Expect = 2e-82 Identities = 623/906 (69%), Gaps = 22/906 (2%) Strand=Plus/Minus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| ||||| || ||||| |||| || || || || || ||||| || ||||| | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973 | || || | |||||||| |||||||| ||||| |||||| |||| ||||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGACTTATAATGCTTTTCGAATCC 3890 Query 35974 CAATTCAGAA-ATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 36032 ||| ||| | ||| | ||| || || || || |||||| ||||| ||| | Sbjct 3889 CAAAG-AGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGT 3831 Query 36033 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 36092 |||| || || || || || | | || | ||| ||||| ||||| ||| | Sbjct 3830 TCATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAG 3771 Query 36093 CGTCTGTTATAATAGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAA 36150 | || || | || |||| | ||||| | || || || |||| || || || Sbjct 3770 CATCAGTGACGATGGATAGAATAGTTTCCTGGCTGGGCTTGTTAACAAGGCAT--TTGAA 3713 Query 36151 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 36210 || ||| || | || || ||| || |||||||||| | ||| || ||||| ||||| Sbjct 3712 CAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAAA 3653 Query 36211 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 36270 || | ||||||||| || |||||||| || |||||||| |||| ||||| || ||| Sbjct 3652 TGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCACT 3593 Query 36271 AAAGAAAATTCCTTCTACTGCCGCA-AAGGCAATAAGTCTCTCTCCATAACCGGCACTG- 36328 ||||| ||||| || || | ||| ||||| | ||||||||| ||| ||| Sbjct 3592 GAAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTGG 3534 Query 36329 --TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 |||| ||||| | | ||||||| ||||||||||| | ||| || || | | | Sbjct 3533 AGTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCGA 3474 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 || ||||| || ||| | | || | | ||||||| | ||| ||||||||||| | | Sbjct 3473 CTGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATAG 3414 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 |||||||| || |||||||| || || || || || |||||||||||||||| Sbjct 3413 AGTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCCT 3354 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTC 36564 | | ||||| ||||| || | ||| ||| | | |||||||| || |||||||| || Sbjct 3353 CAGGGATCTGGACTTCAGTTCCAAA--GTTGGCAACCAAATTTTCGTTGACTATTCCATC 3296 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTT--ATAAAATATTTTTCGTTTGGTGTTAGT 36622 ||||||||| ||||| || || | ||||| | |||||| || ||||||| |||||| Sbjct 3295 ACTGGCTGCGAAAAATGC-AAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAGT 3238 Query 36623 TTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 ||||| ||| | | | | || | ||||| ||| |||||||| || ||||| || Sbjct 3237 TTATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCTG 3178 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAAT 36739 || || |||||||||||||| | ||| || || || | | ||||| || | ||| || Sbjct 3177 GCTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAAC 3118 Query 36740 CTATTT 36745 || ||| Sbjct 3117 CTGTTT 3112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658108652833480