Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq872 89.7 5e-13 seq2250 84.2 2e-11 >seq872 Length=30969 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || || |||| || || |||||||| || |||||||| | Sbjct 26047 CCACCACGAAGACGGAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGAC 26106 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || | ||| ||||| ||| |||||| |||||||||||| || || Sbjct 26107 AAAGTACGGCCATCCTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGG 26166 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || |||||| || || | | ||| | | |||| | ||| ||| Sbjct 26167 ATTCCTTCCTTATCTTGGATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACC 26226 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | ||||| || || || ||||| Sbjct 26227 TCGAGGGTAATGGTCTTACCAGTTAGTGTTTTGACAAAAATCTGCAT 26273 >seq2250 Length=3934 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | |||||| || ||||||| ||||| || || || ||||| ||||| Sbjct 94 CCACCTCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAT 153 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || ||||||||||| | || ||||| ||||| || || || Sbjct 154 AAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGGG 213 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || || || || || | | || | ||||| | | || ||| Sbjct 214 ATTCCTTCCTTATCCTGAATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGATTCTACC 273 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| ||| | ||||| || || | || || ||||| || ||||| ||| Sbjct 274 TCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCATTGCT 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496015652362400