Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq265 334 1e-86 >seq265 Length=13576 Score = 334 bits (370), Expect = 1e-86 Identities = 629/913 (69%), Gaps = 20/913 (2%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| ||||| || ||||| |||| || || || || || ||||| || || || | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 || || || | |||||||| || || || ||| | |||||| |||| ||||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGACTTATAATGCTTTTCGAATCC 3890 Query 49776 CAATTCAGAA-ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 ||| ||| | ||| | ||| || || || || |||||| ||||| ||| | Sbjct 3889 CAAAG-AGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGT 3831 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| || || || || || | | || | ||| ||||| ||||| || | Sbjct 3830 TCATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAG 3771 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATG--TTTAAA 49952 |||| || | || ||| || ||||| | || || || | || | ||| || Sbjct 3770 CATCAGTGACGATGGATAGAATAGTTTCCTGGCTGGGCT--TGTTAACAAGGCATTTGAA 3713 Query 49953 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012 || ||| || | || || ||| || |||||||||| | ||| | ||||| ||||| Sbjct 3712 CAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAAA 3653 Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072 || | ||||||||| || |||||||| || |||||||| |||| ||||| |||||| Sbjct 3652 TGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCACT 3593 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG-- 50130 ||||||||||| || || || ||||| | | ||||||||| |||| |||| Sbjct 3592 GAAGAAGATTCCCTCAACAACGCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTGGA 3533 Query 50131 -TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 |||| ||||| | | ||||||| ||||||||||| | ||| || || || | | Sbjct 3532 GTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCGAC 3473 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 || ||||| || ||| | | || | | ||||||| | ||| ||||| ||||| | | Sbjct 3472 TGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATAGA 3413 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 |||||||| || |||||||| || ||||| || || ||||||||||||||||| Sbjct 3412 GTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCCTC 3353 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTT--CAGCTAAATTTTCATTCACTATTCCGTCA 50367 | ||||| ||||| || | ||| ||| || | |||||||| || |||||||| ||| Sbjct 3352 AGGGATCTGGACTTCAGTTCCAAA--GTTGGCAACCAAATTTTCGTTGACTATTCCATCA 3295 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTT--ATAAAATGTTTTTCGTTGGGTGTTAGTT 50425 |||||||| ||||| || || | ||||| | |||||| | ||||||| ||||||| Sbjct 3294 CTGGCTGCGAAAAATGC-AAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAGTT 3237 Query 50426 TATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 |||| ||| | | | | || | ||||| ||| |||||||| || ||||| || | Sbjct 3236 TATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCTGG 3177 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 | || |||||||||||||| | ||| || || || | | |||||||| | ||| || | Sbjct 3176 CTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAACC 3117 Query 50543 TATTTGGATTTGG 50555 | ||||| || || Sbjct 3116 TGTTTGGGTTGGG 3104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718198795727080