Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq265 311 1e-79 >seq265 Length=13576 Score = 311 bits (344), Expect = 1e-79 Identities = 626/914 (68%), Gaps = 22/914 (2%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| ||||| || ||||| |||| || || || || || ||||| ||||| || | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 || || || | |||||||| || || || ||| | |||||| |||| ||||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGACTTATAATGCTTTTCGAATCC 3890 Query 41881 CAATTCAGAA-ATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939 ||| ||| | ||| | ||| || | ||| || |||||| ||||| ||| | Sbjct 3889 CAAAG-AGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGT 3831 Query 41940 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 41999 |||| || || || || || | | || | ||| ||||| ||||| ||| | Sbjct 3830 TCATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAG 3771 Query 42000 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAA 42057 | || || | || ||| | ||||| | || || || |||| || || || Sbjct 3770 CATCAGTGACGATGGATAGAATAGTTTCCTGGCTGGGCTTGTTAACAAGGCAT--TTGAA 3713 Query 42058 CATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAA 42117 || ||| || | || || ||| || ||||| |||| | ||| || ||||| ||||| Sbjct 3712 CAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAAA 3653 Query 42118 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGA 42177 || | ||||||||| || |||||||| || |||||||| || | ||||| || ||| Sbjct 3652 TGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCACT 3593 Query 42178 AAAGAAGATTCCTTCTACTGCCGCA-AAGGCAATAAGTCTCTCTCCATAACCGGCACTG- 42235 ||||||||||| || || | ||| ||||| | ||||||||| ||| ||| Sbjct 3592 GAAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTGG 3534 Query 42236 --TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 |||| ||||| | | ||||||| ||||||||||| | ||| || || || | | Sbjct 3533 AGTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCGA 3474 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 || ||||| || ||| | | || | | ||||||| | ||| ||||| ||||| | | Sbjct 3473 CTGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATAG 3414 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 |||||||| || |||||||| || ||||| || || ||||||||||| |||| Sbjct 3413 AGTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCCT 3354 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTT--CAGCTAAATTTTCGTTCACTATTCCGTC 42471 | | | ||| ||||| || | ||| ||| || | ||||||||||| |||||||| || Sbjct 3353 CAGGGATCTGGACTTCAGTTCCAAA--GTTGGCAACCAAATTTTCGTTGACTATTCCATC 3296 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGT--TTTATAAAATATTTTTCGTCCGGTGTTAAT 42529 ||||||||| ||||| | ||| | |||| || |||||| || |||||| |||| | Sbjct 3295 ACTGGCTGCGAAAAATG-CAAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAGT 3238 Query 42530 TTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 ||||| ||| | | | | || | ||||| ||| |||||||| || ||||| || Sbjct 3237 TTATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCTG 3178 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAAT 42646 ||||| |||||||||||||| | ||| || || || | | |||||||| | ||| || Sbjct 3177 GCTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAAC 3118 Query 42647 CTATTTGGATTTGG 42660 || ||||| || || Sbjct 3117 CTGTTTGGGTTGGG 3104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671073789095720