Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq265 159 3e-34 >seq265 Length=13576 Score = 159 bits (176), Expect = 3e-34 Identities = 382/566 (67%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || |||| || || |||| || ||| | ||| || |||| | || | ||||||| Sbjct 3717 TTGAACAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTT 3658 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 |||||||| | || |||||||| || || || || | |||||| || |||||||| || Sbjct 3657 GAAAATGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGAC 3598 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCA-AACGCTATCAACCTTTCACCATACGTACT 13317 || || || ||||| ||||| | ||| || || ||| || || || | ||| Sbjct 3597 CCACTGAAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCCAATCTCTCTCCGAA---ACT 3542 Query 13318 ATTTTT--ACTC-TCTATCCACTTTCTG-GCCCAGTTTGCTTTTTGTTTAACGCAGTTCA 13373 || | | || || ||||| || | | ||||| || || || | ||| | || | Sbjct 3541 TTTGCTGGAGTCATCGATCCA-TTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGA 3483 Query 13374 TATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTA 13433 ||||| | | ||||||||| | | | | | |||| | | ||| ||||| ||||| | Sbjct 3482 TATTTGCGACTGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAA 3423 Query 13434 TCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAAC 13493 |||| | |||||||| || || ||||| ||| ||| ||||| ||||| |||| Sbjct 3422 TCAACATAGAGTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAAC 3363 Query 13494 ATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTA 13553 |||||||||| | | ||| ||||| | ||| | | | || |||||||| |||| Sbjct 3362 ATCTAGCCTCAGGGATCTGGACTTCAGTTCCAAAGTTGGCAACCAAATTTTCGTTGACTA 3303 Query 13554 TCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTG 13613 | || ||||| || || ||||| ||||| |||| ||| ||||| | ||||||| || | Sbjct 3302 TTCCATCACTGGCTGCGAAAAATGCAAGAATGTTCTTGATAAAAAATCTTTCGTTATCAG 3243 Query 13614 ACA---ACTTTAACCAAT-CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAA 13669 | ||| ||| | |||| || | |||||||| || || || || ||||| Sbjct 3242 TTAGTTTATTTTCCCAGTGCTGG-GTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAG 3184 Query 13670 AAAGAAGCAACAGCCTTCTTATACAT 13695 || || | ||||| |||||||| Sbjct 3183 AAGCTGGCTTCGGCCTTTTTATACAT 3158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430941445493394