Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq265 163 7e-35 seq2250 159 8e-34 seq872 136 9e-27 >seq265 Length=13576 Score = 163 bits (180), Expect = 7e-35 Identities = 408/614 (66%), Gaps = 18/614 (3%) Strand=Plus/Plus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT--GATATATGGAGGATGTACA 268748 |||||| | || || || | || |||||| || ||| || || ||| ||||| | Sbjct 3107 AACCCAAACAGGTTCGTTCTGTTCCCAATAAAG--TGGCACGAGATTTGGCAAATGTATA 3164 Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAG 268808 || |||||| || || |||||||| |||||||| ||| | ||| | ||| Sbjct 3165 AAAAGGCCGAAGCCAGCTTCTGGACTGTCGAAGAAGTTGATTTATCTCAGGACACCCAGC 3224 Query 268809 ATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTAT-ATCTT--ATATTCTTGCGTTTT 268865 | ||| ||||| | | | || | ||||||| | ||| | |||||||| |||| Sbjct 3225 ACTGGGAAAATAAACTAACTGATAACGAAAGATTTTTTATCAAGAACATTCTTGCATTTT 3284 Query 268866 TTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTAC 268925 | |||| |||||||| || || ||||||||| | || | || || | || || | Sbjct 3285 TCGCAGCCAGTGATGGAATAGTCAACGAAAATTTGGTTGCCAACTTTGGAACTGAAGTCC 3344 Query 268926 AGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAG 268985 |||| ||||| || |||||||| || || ||||||||| |||||||| || || | Sbjct 3345 AGATCCCTGAGGCTAGATGTTTCTATGGCTTCCAGATAATGATAGAAAACATCCACAGCG 3404 Query 268986 AGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTAT 269045 | |||||| | | || || ||||| ||||| | ||||| | || | ||||| Sbjct 3405 AAATGTACTCTATGTTGATTGATACCTATATCAAAGATAATGAGGAGAG----AGACTTC 3460 Query 269046 TTTCTTCTATGAG----AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAA 269101 || || || || ||| ||| | | ||| || || | ||||| ||| || Sbjct 3461 CTTTTTAACGCAGTCGCAAATATCCCATGTATCAAAAAGAAGGCTAATTGGGCACTGGAA 3520 Query 269102 TGGATAAACGAT---AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAA 269158 ||||| | || ||| || |||||| || || | || || || ||| || Sbjct 3521 TGGATCGATGACTCCAGCAAAAGTTTCGGAGAGAGATTGGCCGCCTTCTGCGTTGTTGAG 3580 Query 269159 GGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATG 269218 || || ||||| ||||||||||| || ||||||||| | ||||| | || |||||| Sbjct 3581 GGAATCTTCTTCAGTGGGTCTTTTGCTGCCATCTTTTGGCTCAAGAAGCGTGGTCTTATG 3640 Query 269219 CCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTC 269278 || ||||| || || || ||||| ||||| || | ||||| || | ||| ||||| Sbjct 3641 CCCGGATTGACATTTTCAAACGAGTTGATTTGCCGAGACGAGGGACTCCACACAGACTTT 3700 Query 269279 GCTTGTTTATTATT 269292 | ||| || || || Sbjct 3701 GGTTGCTTGTTGTT 3714 >seq2250 Length=3934 Score = 159 bits (176), Expect = 8e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | ||| | || | |||||||| ||||| || || || ||| Sbjct 91 ATACCACCTCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCA 150 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | || ||||| |||||||| ||||| ||||| || | ||| || || || Sbjct 151 GATAAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGT 210 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||| |||||||||||||| ||| || ||||| || | || || || ||| Sbjct 211 GGGATTCCTTCCTTATCCTGAATCTTCTGC-TTGACATTGTCAATAGTGTCAGAAGATTC 269 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| || ||||| ||||||||||| || || || || || ||||||||| Sbjct 270 TACCTCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCATT 321 >seq872 Length=30969 Score = 136 bits (150), Expect = 9e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || |||||||| ||||| | ||| | || || || | || || || Sbjct 26077 GTGGATTCTTTTTGGATATTATAATCAGACAAAGTACGGCCATCCTCCAACTGCTTACCG 26136 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||| || | | || ||||| || || |||||||| ||||| || || || ||||| Sbjct 26137 GCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGGATTTTCTGCTTA 26196 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||||| | || |||| || || ||||| || ||||| ||||||||||| ||||| Sbjct 26197 -ACATTTTCGATGGAATCGGAAGACTCGACCTCGAGGGTAATGGTCTTACCAGTTAGTGT 26255 Query 104542 TTTTACAAATATCTGCATT 104560 ||| ||||| ||||||||| Sbjct 26256 TTTGACAAAAATCTGCATT 26274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151283376379276