Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq872 120 3e-22 seq2250 86.0 5e-12 seq356 82.4 6e-11 >seq872 Length=30969 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| ||| || ||||| || || ||||||| ||| || | |||||| Sbjct 26065 ACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGACAAAGTACGGCCATCCTCC 26124 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | |||||||||| | | || ||||| |||||||| || | | |||||| || Sbjct 26125 AACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGG 26184 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||||||||| | | | |||| ||||| |||||| ||||| || ||||| ||| Sbjct 26185 ATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACCTCGAGGGTAATGGTCTTA 26244 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||||||||| Sbjct 26245 CCAGTTAGTGTTTTGACAAAAATCTGCAT 26273 >seq2250 Length=3934 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || || ||||| || ||||| || ||||||||||||| || || | || Sbjct 109 AATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGATAAAGTACGGCCATCT 168 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || || || ||||| || |||| | ||||||||| || || | | |||||| ||| Sbjct 169 TCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCC 228 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| |||||||||| | | || || || | ||| || ||| | || || || Sbjct 229 TGAATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGATTCTACCTCAAGGGTAATTGTC 288 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || ||||||||||| Sbjct 289 TTACCAGTTAGAGTCTTAACGAAAATCTGCAT 320 >seq356 Length=31527 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| || |||||||| |||| || || || | || |||| ||||||||| || | Sbjct 31102 TCCTTCTGGATGTTGTAGTCAGA-AAGAGTACGTCCATCTTCCAATTGCTTACCGGCGAA 31044 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||||| || | | |||||| ||| || || ||||||| Sbjct 31043 GATAAGTCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGGATCTTTTGCTTGACGTT 30984 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || | ||||| |||||| ||||| || ||||| |||||||| | ||||| || Sbjct 30983 TTCGATAGAATCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTAAC 30924 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 30923 AAAAATCTGCAT 30912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421211170209797