Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2250 98.7 9e-16 seq872 98.7 9e-16 seq356 89.7 5e-13 >seq2250 Length=3934 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | ||||| |||||||| | |||||||||||| || | | Sbjct 82 AAAATTTGCATACCACCTCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATG 141 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| | ||| | ||| || || ||||| || | || || | | ||| Sbjct 142 TTGTAATCAGATAAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGC 201 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| || || ||||| || || | ||| || |||||| | | | ||||||| Sbjct 202 TGGTCTGGTGGGATTCCTTCCTTATCCTGAATCTTCTGCTTGACATTGTCAATAGTGTCA 261 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || || || || ||||| ||||| || || || |||||||| Sbjct 262 GAAGATTCTACCTCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCAT 320 >seq872 Length=30969 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| ||||| ||||| | |||||||| || ||| | ||||||| Sbjct 26065 ACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGACAAAGTACGGCCATCCTCC 26124 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || ||| ||||||| || | |||||||||||| || || ||||| || || | Sbjct 26125 AACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGG 26184 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||| || ||| | || | ||||| || | || ||||| || Sbjct 26185 ATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACCTCGAGGGTAATGGTCTTA 26244 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||||| || ||||| ||||| |||||||| || Sbjct 26245 CCAGTTAGTGTTTTGACAAAAATCTGCATTCT 26276 >seq356 Length=31527 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || ||| |||||||| | ||||||||||| || | ||| || || | ||| Sbjct 31127 TCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGTCC 31068 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| || || ||| | ||||| | ||||||||||||||| || || ||||| || Sbjct 31067 ATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGGATTCCTTCCTT 31008 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || ||| ||||||| ||| || || | || || || | ||||| Sbjct 31007 ATCCTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACCTCGAGGGTGAT 30948 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || || | ||||| ||||| ||||||||| Sbjct 30947 GGTCTTACCGGTTAAGGTTTTAACAAAAATCTGCATG 30911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247508418920