Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5783 134 2e-27 seq2963 122 1e-23 >seq5783 Length=38412 Score = 134 bits (148), Expect = 2e-27 Identities = 188/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| ||| |||| ||||||||||| || || ||||| ||||| Sbjct 27744 GCCAAGCGTCACAGAAAGAT-TCTAAGAGACAACATCCAAGGTATTACTAAGCCCGCTAT 27802 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | || |||||||||||||| ||||| ||| ||||||| | |||| ||||| | Sbjct 27803 CAGAAGACTTGCTCGTCGTGGTGGTGTCAAACGTATCTCTGGTCTCATCTACGAAGAAAC 27862 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||| | || ||||||| | |||||| || ||| || || || || Sbjct 27863 CCGTCTTGTCCTCAAACTCTTCCTGGAACACGTTATTAGAGACGCTGTCACTTACACTGA 27922 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| || ||||||||||| ||| | ||| | |||||||| | || | ||||| Sbjct 27923 ACACGCTAAGCGCAAGACTGTCACTTCCCTTGATGTAGTCTATGCCCTTAAGAGACAAGG 27982 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || |||||||| Sbjct 27983 TCGCACTTTGTACGGTTTTGG 28003 >seq2963 Length=3948 Score = 122 bits (134), Expect = 1e-23 Identities = 185/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| |||| |||||||||||||||| || || ||||| || || Sbjct 1055 GCCAAGCGTCACAGAAAGAT-TCTTAGAGATAACATCCAAGGTATTACTAAGCCTGCAAT 997 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | || |||||||||||||| || || ||| | || || | | || ||||| | Sbjct 996 CAGAAGACTCGCTCGTCGTGGTGGTGTTAAACGTATATCAGGTCTCATATACGAAGAAAC 937 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||||| || | ||||| | ||| || ||||| || ||||| || Sbjct 936 TCGACTGGTTTTAAAACTTTTCCTAGAACACGTAATTAGAGATGCCGTCACATATACTGA 877 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || |||||||| ||||| | ||| | |||||||| | ||| | ||||| Sbjct 876 ACACGCCAAGCGCAAGACTGTTACCTCTTTAGATGTTGTCTATGCTCTTAAAAGACAAGG 817 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| || || ||||| || Sbjct 816 ACGTACTATCTACGGTTTCGG 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068071148321