Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq265 320 2e-82 >seq265 Length=13576 Score = 320 bits (354), Expect = 2e-82 Identities = 628/914 (69%), Gaps = 22/914 (2%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| ||||| || ||||| |||| || || || || || ||||| || || || | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 || || || | |||||||| || || || ||| | |||||| |||| ||||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGACTTATAATGCTTTTCGAATCC 3890 Query 33120 CAATTCAGAA-ATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 ||| ||| | ||| | ||| || ||||| || |||||| ||||| ||| | Sbjct 3889 CAAAG-AGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGT 3831 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| || || || || || | | || | ||| ||||| ||||| || | Sbjct 3830 TCATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAG 3771 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATG--TTTAAA 33296 |||| || | || ||| || ||||| | || || || | || | ||| || Sbjct 3770 CATCAGTGACGATGGATAGAATAGTTTCCTGGCTGGGCT--TGTTAACAAGGCATTTGAA 3713 Query 33297 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 33356 || ||| || | || || ||| || |||||||||| | ||| | ||||| ||||| Sbjct 3712 CAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAAA 3653 Query 33357 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGA 33416 || | ||||||||| || |||||||| || |||||||| |||| ||| || || ||| Sbjct 3652 TGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCACT 3593 Query 33417 AAAGAAGATTCCTTCTACTGCAGCA-AAGGCAATAAGTCTCTCTCCATAACCGGCGCTG- 33474 ||||||||||| || || | ||| ||||| | ||||||||| ||| |||| Sbjct 3592 GAAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTGG 3534 Query 33475 --TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 |||| ||||| | | ||||||| ||||||||||| | ||| || || || | | Sbjct 3533 AGTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCGA 3474 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 || ||||| || ||| | | || | | ||||||| | ||| ||||| ||||| | | Sbjct 3473 CTGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATAG 3414 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||||||| || |||||||| || ||||| || || |||||||||||||||| Sbjct 3413 AGTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCCT 3354 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTT--CCGCCAAATTTTCATTCACTATTCCGTC 33710 | | ||||| ||||| || | ||| ||| | |||||||||| || |||||||| || Sbjct 3353 CAGGGATCTGGACTTCAGTTCCAAA--GTTGGCAACCAAATTTTCGTTGACTATTCCATC 3296 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTT--ATAAAATATTTTTCGTCTGGTGTTAGT 33768 ||||||||| ||||| || || | ||||| | |||||| || |||||| |||||| Sbjct 3295 ACTGGCTGCGAAAAATGC-AAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAGT 3238 Query 33769 TTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 33825 ||||| ||| | | | | || | ||||| ||| |||||||| || ||||| || Sbjct 3237 TTATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCTG 3178 Query 33826 GCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAAT 33885 || || |||||||||||||| | ||| || || | | | |||||||| | ||| || Sbjct 3177 GCTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAAC 3118 Query 33886 CTATTTGGATTTGG 33899 || ||||| || || Sbjct 3117 CTGTTTGGGTTGGG 3104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622886486008520