Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq265 114 3e-20 seq3307 102 2e-16 >seq265 Length=13576 Score = 114 bits (126), Expect = 3e-20 Identities = 314/474 (66%), Gaps = 19/474 (4%) Strand=Plus/Plus Query 22177 AAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCA 22236 ||||| || || |||||| | ||||||||| | ||||| ||||| || || || Sbjct 3236 AAACTAACTGATAACGAAAGATTTTTTATCAAGAACATTCTTGCATTTTTCGCAGCCAGT 3295 Query 22237 GACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCTGAAATTCAATACCCAGAG 22296 || || ||||| || ||| | || | || |||| | ||||| | || ||| ||| Sbjct 3296 GATGGAATAGTCAACGAAAATTTGGTTGCCAACTTTGGAACTGAAGTCCAGATCCCTGAG 3355 Query 22297 GCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTCT 22356 || |||||||||||||| | || || ||||| ||||| | ||| |||| || ||| Sbjct 3356 GCTAGATGTTTCTATGGCTTCCAGATAATGATAGAAAACATCCACAGCGAAATGTACTCT 3415 Query 22357 ATGATGCTACAGTCACTCGTAGAAGATAAAGACGAACAACGAAACTTA---TTCCGCGCG 22413 ||| || | | | | ||||||| || || || |||| || ||| Sbjct 3416 ATGTTGATTGATACCTATATCAAAGATAATGAGGAGA---GAGACTTCCTTTTTAACGC- 3471 Query 22414 ATTCGCACC-ATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA--- 22469 | ||||| || | || || || || ||||| ||||||| ||| ||||||| | Sbjct 3472 AGTCGCAAATATCCCATGTATCAAAAAGAAGGCTAATTGGGCACTGGAATGGATCGATGA 3531 Query 22470 ---CAATGAACGTTCATTCGCGGAACGTCTTATTGCATT-TGCTGTGGTTGAAGGCATTT 22525 || || ||| ||| || | | || || ||| || ||||| || || | Sbjct 3532 CTCCAGCAAAAGTT---TCGGAGAGAGATTGGCCGCCTTCTGC-GTTGTTGAGGGAATCT 3587 Query 22526 TCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTC 22585 |||| ||| | ||| ||| ||||||||||| || || |||| ||||||| || Sbjct 3588 TCTTCAGTGGGTCTTTTGCTGCCATCTTTTGGCTCAAGAAGCGTGGTCTTATGCCCGGAT 3647 Query 22586 TAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTG 22639 | || |||||||| ||||| ||| ||||||| ||||| || || || || |||| Sbjct 3648 TGACATTTTCAAACGAGTTGATTTGCCGAGACGAGGGACTCCACACAGACTTTG 3701 >seq3307 Length=10489 Score = 102 bits (112), Expect = 2e-16 Identities = 175/247 (71%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 46894 ATAACCACCAACTGATCCAAATGATTTCGTAAAGGTTCCCATCATTACATCAATATTTGA 46953 |||||||||||| | ||||| ||| || || || ||||||| |||||||| |||| Sbjct 5125 ATAACCACCAACAGCACCAAAGCTTTTAGTGAAAGTACCCATCAAAACATCAAT-TTTGC 5067 Query 46954 AGTG-TTAATATTGAAATGTTCAGCA-ACTCCACGGCCCGTTTGTCCAGTTGCGCCGATA 47011 ||| | |||||| || ||||| ||| || ||||| || | |||| | || || || Sbjct 5066 GGTGATCAATATTAAAGTGTTC-GCAGACACCACGACCGTGCTTTCCAATGGCACCAATG 5008 Query 47012 GAATGTGCTTCATCCAGGTATAAATGCGCACC--GTACTTGGTTTTTACTTGAACAATCT 47069 ||||| |||||||| | | | ||| | | || |||| ||| | |||||| | Sbjct 5007 GAATGGGCTTCATCAA--CAAAGATGTAAAACTTATATTTGGCTTTGAGAGCAACAATTT 4950 Query 47070 CATTGAGATTGCAAAAATCTCCTTCCATTGAATAAATACCTTCAACAAATACAACAATCT 47129 || |||||||| || || |||||||| ||||| | |||||||||| || | ||| | Sbjct 4949 CACGAAGATTGCAGAACTCACCTTCCATAGAATAGAGCCCTTCAACAACGACCAGAATTT 4890 Query 47130 TGTCCCA 47136 | | ||| Sbjct 4889 TATTCCA 4883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303223396197254