Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq265 311 1e-79 >seq265 Length=13576 Score = 311 bits (344), Expect = 1e-79 Identities = 624/911 (68%), Gaps = 22/911 (2%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| ||||| || ||||| |||| || || || || || ||||| || ||||| | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 | || || | |||||||| |||||||| ||| | |||||| |||| ||||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGACTTATAATGCTTTTCGAATCC 3890 Query 32477 CAATTCAGAA-ATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 32535 ||| ||| | ||| | ||| || || || || |||||| ||||| ||| | Sbjct 3889 CAAAG-AGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGT 3831 Query 32536 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 32595 |||| || || || || || | | || | ||| ||||| ||||| ||| | Sbjct 3830 TCATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAG 3771 Query 32596 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAA 32653 | || || | || ||| | ||||| | || || || |||| || || || Sbjct 3770 CATCAGTGACGATGGATAGAATAGTTTCCTGGCTGGGCTTGTTAACAAGGCAT--TTGAA 3713 Query 32654 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 32713 || ||| || | || || ||| || |||||||||| | ||| || ||||| ||||| Sbjct 3712 CAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAAA 3653 Query 32714 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 32773 || | ||||||||| || |||||||| || |||||||| |||| ||||| || ||| Sbjct 3652 TGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCACT 3593 Query 32774 AAAGAAAATTCCTTCTACTGCCGCA-AAGGCAATAAGTCTCTCTCCATAACCGGCGCTG- 32831 ||||| ||||| || || | ||| ||||| | ||||||||| ||| |||| Sbjct 3592 GAAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTGG 3534 Query 32832 --TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 |||| ||||| | | ||||||| ||||||||||| | ||| || || | | | Sbjct 3533 AGTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCGA 3474 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 || ||||| || ||| | | || | | ||||||| | ||| ||||||||||| | | Sbjct 3473 CTGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATAG 3414 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 |||||||| || |||||||| || || || || || ||||| |||||||||| Sbjct 3413 AGTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCCT 3354 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTC 33067 | | ||||| ||||| || | ||| ||| | | |||||||| || |||||||| || Sbjct 3353 CAGGGATCTGGACTTCAGTTCCAAA--GTTGGCAACCAAATTTTCGTTGACTATTCCATC 3296 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTT--ATAAAATATTTTTCGTCTGGTGTTAGT 33125 ||||||||| ||||| || || | ||||| | |||||| || |||||| |||||| Sbjct 3295 ACTGGCTGCGAAAAATGC-AAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAGT 3238 Query 33126 TTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 33182 ||||| ||| | | | | || | ||||| ||| |||||||| || ||||| || Sbjct 3237 TTATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCTG 3178 Query 33183 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAAT 33242 || || |||||||||||||| | ||| || || || | | ||||| || | ||| || Sbjct 3177 GCTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAAC 3118 Query 33243 CTATTTGGATT 33253 || ||||| || Sbjct 3117 CTGTTTGGGTT 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633570244641200