Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2250 109 5e-19 seq872 109 5e-19 >seq2250 Length=3934 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||| || || || |||||| | || ||||| | || || | || || || || | Sbjct 322 CAATGCAGATTTTCGTTAAGACTCTAACTGGTAAGACAATTACCCTTGAGGTAGAATCTT 263 Query 25057 CTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||||| || || || ||||| || || || || ||||| || ||||| || Sbjct 262 CTGACACTATTGA--CAATGTCAAGCAGAAGATTCAGGATAAGGAAGGAATCCCACCAGA 205 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| ||||||| || || |||||| | ||||||| || ||| | ||||| Sbjct 204 CCAGCAGCGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTTTATCTGATTA 145 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || ||||| || || || || || | | || ||||| || Sbjct 144 CAACATCCAGAAGGAATCTACTCTTCACTTGGTATTGCGTCTTAGAGGTGG 94 >seq872 Length=30969 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | || ||||| |||| || |||| || ||||| || Sbjct 26274 AATGCAGATTTTTGTCAAAACACTAACTGGTAAGACCATTACCCTCGAGGTCGAGTCTTC 26215 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || | ||||| | ||||| |||||| || || ||||| || || || || || Sbjct 26214 CGATTCCATCGAAAATGTTAAGCAGAAAATCCAAGATAAGGAAGGAATCCCCCCAGATCA 26155 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || |||||||| || || || || |||| || ||| || ||||| || Sbjct 26154 GCAACGTTTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGTACTTTGTCTGATTATAA 26095 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| |||||||||||||| || ||||| || || Sbjct 26094 TATCCAAAAAGAATCCACTCTTCATTTGGTCCT 26062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433286822600555