Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq872 138 3e-27 seq356 136 9e-27 seq2250 114 3e-20 >seq872 Length=30969 Score = 138 bits (152), Expect = 3e-27 Identities = 181/248 (73%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||||| ||| |||||||||||||||||| || | Sbjct 26047 CCACCACGAAGACGGAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGAC 26106 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | || || || || || || || || || || ||||||| ||| || || |||| Sbjct 26107 AAAGTACGGCCATCCTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTG---ATCTGGG 26163 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| ||||| ||||||||| || || ||||| || |||||| || || Sbjct 26164 GGGATTCCTTCCTTATCTTGGATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCG 26223 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 || ||||| || || ||||| || || || || ||||| || ||||||||| | |||| Sbjct 26224 ACCTCGAGGGTAATGGTCTTACCAGTTAGTGTTTTGACAAAAATCTGCATTCT-AGATTC 26282 Query 288484 TAATATTT 288491 ||||||| Sbjct 26283 GAATATTT 26290 >seq356 Length=31527 Score = 136 bits (150), Expect = 9e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || | || | || ||| || ||||| || ||||| | Sbjct 31138 CCACCACGGAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAA 31079 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| ||||| || || |||||||| || | || ||| |||||| Sbjct 31078 AGAGTACGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGA---TCTGGG 31022 Query 288367 ---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||| ||||||||||| ||| || || |||||||| ||||||||| || || Sbjct 31021 GGGATTCCTTCCTTATCCTGGATCTTTTGC-TTGACGTTTTCGATAGAATCGGAAGACTC 30963 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| | || || || || |||||||| Sbjct 30962 AACCTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTAACAAAAATCTGCAT 30912 >seq2250 Length=3934 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | | || || || ||||| | |||||| || ||||| Sbjct 129 TTCCTTCTGGATGTTGTAATCAGATAAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAA 188 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || |||||||| || |||||||||||| |||||||| || ||| || || || Sbjct 189 AATAAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGAATCTTCTGCTTGACATT 248 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || |||||||| || || || || ||||| || || |||||||| || Sbjct 249 GTCAATAGTGTCAGAAGATTCTACCTCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAAC 308 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 309 GAAAATCTGCATT 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179536553631366