Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2250 98.7 1e-15 seq872 98.7 1e-15 seq356 98.7 1e-15 >seq2250 Length=3934 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | |||||| || || || | | || ||||| || |||||||| || Sbjct 94 CCACCTCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAT 153 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||||||||| | | || |||||||| ||||| || || Sbjct 154 AAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGGG 213 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || || || || || | |||| || | ||||| | || || || Sbjct 214 ATTCCTTCCTTATCCTGAATCTTCTGCTTGACATTG-TCAATAGTGTCAGAAGATTCTAC 272 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT-TATAATA 138625 ||| | || | || |||||||| ||||| || || ||||||||||| ||| | ||| Sbjct 273 CTCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCATTGCTAAAAAATG 332 Query 138626 TTATT 138630 ||||| Sbjct 333 TTATT 337 >seq872 Length=30969 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | || || ||||| || || || || | Sbjct 26047 CCACCACGAAGACGGAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGAC 26106 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| | || ||||||| | |||| | ||| || || || || || Sbjct 26107 AAAGTACGGCCATCCTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGG 26166 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || |||||| || || | | ||| | || |||| ||||| ||| Sbjct 26167 ATTCCTTCCTTATCTTGGATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACC 26226 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || |||||||| || ||||| |||||||||||||| Sbjct 26227 TCGAGGGTAATGGTCTTACCAGTTAGTGTTTTGACAAAAATCTGCAT 26273 >seq356 Length=31527 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||| || || | | | || ||||| || ||||||||||| | |||||| || Sbjct 31124 CAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGTCCATC 31065 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || | ||| ||||||| |||| || | || || || || || || ||||| || || Sbjct 31064 TTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGGATTCCTTCCTTATC 31005 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| ||||| || | | ||| | | |||| ||||| ||||||| || | || Sbjct 31004 CTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACCTCGAGGGTGATGGT 30945 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| || | ||||| |||||||||||||||||| Sbjct 30944 CTTACCGGTTAAGGTTTTAACAAAAATCTGCATGGCT 30908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496214033025840