Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq872 122 8e-23 seq356 102 8e-17 seq2250 93.3 4e-14 >seq872 Length=30969 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || || |||||||| ||||| ||||| | Sbjct 26047 CCACCACGAAGACGGAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGAC 26106 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||| || || || ||||||| || |||||||| || || Sbjct 26107 AAAGTACGGCCATCCTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGG 26166 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || |||||||||||| | | ||||| || || | | |||||| Sbjct 26167 ATTCCTTCCTTATCTTGGATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACC 26226 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || || || || ||||| |||||||||||||| Sbjct 26227 TCGAGGGTAATGGTCTTACCAGTTAGTGTTTTGACAAAAATCTGCAT 26273 >seq356 Length=31527 Score = 102 bits (112), Expect = 8e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || ||| ||||| || | ||||| || || || || ||||| || Sbjct 31141 GCACCACCACGGAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCA 31082 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || | || || || ||| |||| | || |||||||| || Sbjct 31081 GAAAGAGTACGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGG 31022 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||||||| | ||||| | || | | ||| Sbjct 31021 GGGATTCCTTCCTTATCCTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCA 30962 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||| ||| | || || ||||| | ||||| |||||||||||||||||| Sbjct 30961 ACCTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTAACAAAAATCTGCATGGCT 30908 >seq2250 Length=3934 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| ||||| || | ||||| || || || || |||||||| | || || | Sbjct 106 CGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGATAAAGTACGGCCA 165 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || ||||| |||||| | || | |||||||| || || || || || ||||| Sbjct 166 TCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTA 225 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || |||||||||| | || | ||||| | | || || || | ||| | Sbjct 226 TCCTGAATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGATTCTACCTCAAGGGTAATT 285 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || ||||| || || ||||||||||| ||| Sbjct 286 GTCTTACCAGTTAGAGTCTTAACGAAAATCTGCATTGCT 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475454456503280