Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq356 136 9e-27 seq2250 129 1e-24 >seq356 Length=31527 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||| || | |||||| || || ||||| |||| ||||||||||| | ||| Sbjct 31132 CGGAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTA 31073 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||||| ||||||||||| || | ||||| || || |||||| Sbjct 31072 CGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGGATTCCT 31013 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||||||||| ||| ||||| | || | | || || || | Sbjct 31012 TCCTTATCCTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACCTCGAGG 30953 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | ||||| |||||||| || Sbjct 30952 GTGATGGTCTTACCGGTTAAGGTTTTAACAAAAATCTG 30915 Score = 100 bits (110), Expect = 7e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||||||||||||||| ||||| |||||||||||| | ||| | | || |||||| Sbjct 31033 AAAGACTTATCTTCGCCGGTAAGCAATTGGAAGATGGACGTACTCTTTCTGACTACAACA 31092 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||||| || ||||| || ||| | ||||||||||| || Sbjct 31093 TCCAGAAGGAATCTACCCTCCACTTGGTTTTGAGACTCCG 31132 >seq2250 Length=3934 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | || || | ||| ||||| || ||||| |||| |||||| |||| ||||| Sbjct 99 TCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGATAAAGT 158 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| || || || || ||||| || |||||||||||||| || ||||| Sbjct 159 ACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGGGATTCC 218 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||||||||| ||||| || || | ||||| | | |||||| || | Sbjct 219 TTCCTTATCCTGAATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGATTCTACCTCAAG 278 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || ||||| || || ||||| || Sbjct 279 GGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTG 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178803826837399