Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq265 230 3e-55 >seq265 Length=13576 Score = 230 bits (254), Expect = 3e-55 Identities = 582/871 (67%), Gaps = 17/871 (2%) Strand=Plus/Minus Query 18691 TTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAATGGATT 18749 || ||||||||||| || || |||| | || || ||| ||||| || || ||||| || Sbjct 3975 TTCTCAAAGAAATTGGTCTTACCCTGCATGGAAAT-CATATCCATGAAGTCGAATGGGTT 3917 Query 18750 TTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTT 18809 || ||||| |||| |||||| || | || | | ||| ||||| || | Sbjct 3916 GATTGACTTATAATGCTTTTCGAATCCCAAAGAGACTAACAAACGATCGGCTACGAACTC 3857 Query 18810 AATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGT-AGTGCATCTG 18868 |||||| | ||||| ||| ||||| || || | | |||| || | || | Sbjct 3856 GATATATTGGCACATCAGGACACTGTTCATACCAATCAGAG-AGCAGGGGAGGGAGTCGG 3798 Query 18869 TAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCAT 18928 | | ||| ||||| || || || || || | | || |||| || | || | Sbjct 3797 TTAAAAACTCTTGCTCAATCACGACAGCATCAGTGACGATGGATAGAATAGTTTCCTGGC 3738 Query 18929 TAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGT 18988 | || || | ||| ||| |||| ||| || |||| || || |||||||||| Sbjct 3737 TGGGCTTGTTAACAAGGCATTTGAACAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGT 3678 Query 18989 CTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACC 19048 ||| | ||||| || || |||||||| || || ||||| || || | || || | || Sbjct 3677 CTCGGCAAATCAACTCGTTTGAAAATGTCAATCCGGGCATAAGACCACGCTTCTTGAGCC 3618 Query 19049 AGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG-CAACT 19107 | || || | |||||| || ||| ||||| || || || || | ||| ||| | | Sbjct 3617 AAAAGATGGCAGCAAAAGACCCACTGAAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCC 3559 Query 19108 AGTCTTTCTCCATAACTA--GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCT 19165 | ||| ||||| |||| || | | || ||||||| ||||||||||| ||||| Sbjct 3558 AATCTCTCTCCGAAACTTTTGCTGGAGTC--ATCGATCCATTCCAGTGCCCAATTAGCCT 3501 Query 19166 TCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTAT 19225 ||||||| | |||||| || | | | | ||||| || | | ||| || ||| Sbjct 3500 TCTTTTTGATACATGGGATATTTGCGACTGCGTTAAAAAGGAAGTCTCTCTCCTCATTAT 3441 Query 19226 CTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCA 19285 |||| | ||| | ||| ||||| | | ||||||||| || || |||||||| | Sbjct 3440 CTTTGATATAGGTATCAATCAACATAGAGTACATTTCGCTGTGGATGTTTTCTATCATTA 3381 Query 19286 TCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA 19345 |||| || || || |||||||| || || | ||||| |||||| | | ||| | | | Sbjct 3380 TCTGGAAGCCATAGAAACATCTAGCCTCAGGGATCTGGACTTCAGTTCCAAAGTTGGCAA 3321 Query 19346 CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGT--TTAAT 19403 |||||||||| || |||||||||||||| ||||| |||||||| || | |||| || || Sbjct 3320 CCAAATTTTCGTTGACTATTCCATCACTGGCTGCGAAAAATGC-AAGA-ATGTTCTTGAT 3263 Query 19404 AAAATGTTTTTCATCTGAGGTTAATGTATT---CCAATCATTAATATCTTTAGATAAATC 19460 |||| | |||| | |||| | |||| ||| | | | || | ||||||||| Sbjct 3262 AAAAAATCTTTCGTTATCAGTTAGTTTATTTTCCCAGTGCTGGGTGTCCTGAGATAAATC 3203 Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520 |||||||| || ||||| || || || || ||||||||||| | ||| || || | Sbjct 3202 AACTTCTTCGACAGTCCAGAAGCTGGCTTCGGCCTTTTTATACATTTGCCAAATCTCGTG 3143 Query 19521 ATATTGTATAGGAAATATAACAAATCTATTT 19551 | | ||| || || | ||| || || ||| Sbjct 3142 CCACTTTATTGGGAACAGAACGAACCTGTTT 3112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562054015471080