Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq265 136 6e-27 seq872 123 4e-23 >seq265 Length=13576 Score = 136 bits (150), Expect = 6e-27 Identities = 538/832 (65%), Gaps = 24/832 (3%) Strand=Plus/Minus Query 17885 TTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTA 17944 ||||| |||||||| ||||| || | || || || | || ||| || || ||||| || Sbjct 3975 TTCTCAAAGAAATTGGTCTTACCCTGCATGGAAATCATATCCATGAAGTCGAATGGGTTG 3916 Query 17945 GTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACAAATTCG 18004 | | ||||||| ||||| | || | ||| || | ||| ||||| || ||| Sbjct 3915 ATTGACTTATAATGCTTTTCGAATCCCAAAGAGACTAACAAACGATCGGCTACGAACTCG 3856 Query 18005 ACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAATA 18064 | |||||| |||||| | | |||||||| | || | | || || | || | Sbjct 3855 ATATATTGGCACATCAGGACACTGTTCATACCAATCAGAGAGCAGGGGAGGGAGTCGGTT 3796 Query 18065 ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTT-TGG 18123 | ||| |||| ||| ||| | |||| || | | ||| || | ||| || ||| Sbjct 3795 AAAAACTCTTGCTCAATCACGACAGCATCAGTGACGATGGATAGAA---TAGTTTCCTGG 3739 Query 18124 CAAT--TTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCT 18181 | || |||| | | ||| || | | || || |||| || ||||| | || Sbjct 3738 CTGGGCTTGTTAACAAGGC-ATTTGAACA--ACAAGCAACCAAAGTCTGTGTGGAGTCCC 3682 Query 18182 TCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttttt 18241 || |||| | | || || ||||| ||| || || |||||||| | ||| | || || Sbjct 3681 TCGTCTCGGCAAATCAACTCGTTTGAAAATGTCAATCCGGGCATAAGACCACGCTTCTTG 3622 Query 18242 AGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGC-GAACGC 18300 |||||||| || | || ||| | | ||||| || |||||||| |||| ||| || Sbjct 3621 AGCCAAAAGATGGCAGCAAAAGACCCACTGAAGAAGATTCCCTCAACA-ACGCAGAAGGC 3563 Query 18301 TATTAATCTTTCAGCAAAACTGTATTTATTGC--TCAGT-ATCCATTTTTGTGCCCA-TT 18356 ||||| || | ||||| ||| || ||| ||||||| ||||||| || Sbjct 3562 GGCCAATCTCTCTCCGAAACT---TTTGCTGGAGTCATCGATCCATTCCAGTGCCCAATT 3506 Query 18357 CTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTT 18416 |||| ||||| || ||| | | | || ||||| | ||| | || | Sbjct 3505 AGCCTTCTTTTTG-ATACATGGGATATTTGCGACTGCGTTAAAAAGGAAGTCTCTCTCCT 3447 Query 18417 TGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCA 18476 |||||| ||||| || || || |||| ||| |||||||| || ||| |||| | Sbjct 3446 CATTATCTTTGATATAGGTATCAATCAACATAGAGTACATTTCGCTGTGGATGTTTTCTA 3387 Query 18477 TAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATATTGAATCTCGCTATAAAAT 18535 | |||||| || | ||| || |||||||||| ||||| | || | | | ||| | Sbjct 3386 TCATTATCTGGAAGCCATAGAAACATCTAGCCTCAGGGATCTGGACTTCAGTTCCAAAGT 3327 Query 18536 CTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATAT 18595 | | |||||||| || || ||||| || ||| | |||||||||||| | || | Sbjct 3326 -TGGCAACCAAATTTTCGTTGACTATTCCATCACTGGCTGCGAAAAATGCAAGAATGTTC 3268 Query 18596 TTAATGAAATGTTTTTCATTATCCTTGAG---ATTGTTCCATTCATCTATATCTTTTGAT 18652 || || ||| | |||| ||||| | || ||| | ||| | | | || | ||| Sbjct 3267 TTGATAAAAAATCTTTCGTTATCAGTTAGTTTATTTTCCCAGTGCTGGGTGTCCTGAGAT 3208 Query 18653 AGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 | |||||||||||| ||||| || | |||||||| ||| ||||||| Sbjct 3207 AAATCAACTTCTTCGACAGTCCAGAAGCTGGCTTCGGCCTTTTTATACATTT 3156 >seq872 Length=30969 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 || |||||| || ||| | |||||| | ||||| || || ||||| | || ||||| Sbjct 26277 TAGAATGCAGATTTTTGTCAAAACACTAACTGGTAAGACCATTACCCTCGAGGTCGAGTC 26218 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||| ||| || ||| || || | ||||| |||||||| ||||| || || ||||| Sbjct 26217 TTCCGATTCCATCGAAAATGTTAAGCAGAAAATCCAAGATAAGGAAGGAATCCCCCCAGA 26158 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 || ||| | ||||| | ||||||||||||| | || ||| | | ||||| || ||||| Sbjct 26157 TCAGCAACGTTTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGTACTTTGTCTGATTA 26098 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 |||||| ||||| | || |||||||| || Sbjct 26097 TAATATCCAAAAAGAATCCACTCTTCATTTGGT 26065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731800669925200