Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1229 100 8e-16 seq1268 89.7 2e-12 >seq1229 Length=32409 Score = 100 bits (110), Expect = 8e-16 Identities = 220/321 (69%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 ||| |||| ||||||||||| ||||||||||| | | || | || || | | ||| | Sbjct 5426 TTTGCCAATGGCATCAATTTCATCAATGAAAATTATGCTAGGCGCATGTTTTTTGGCATT 5485 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||||| ||||| || || || || || | ||||||| ||||||| || || ||||| Sbjct 5486 TGCAAATAGATCTCTGACGCGAGAAGCACCCACACCAACAAACATTTCAACGAACTCAGA 5545 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | |||| | ||||| || ||| || || || ||| | |||| || || Sbjct 5546 TCCACTTACTGAGAAGAATGGAACTCCTGCCTCACCGGCAGTAGCCTTGGCCAAGAGAGT 5605 Query 289206 CTTACCTGTTCCAGGTGGTCC-CTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 || |||||||| || || || ||| || | | || | |||| |||||| || || Sbjct 5606 TTTTCCTGTTCCGGGGGGGCCGCTC-AAAATGGCACCTCTGGGTATTTTTGCGCC--CA- 5661 Query 289265 ACTTAT-ATTTCT-CAGGGCTCTTTAAAAATTCT-ACAATTTCCTCAAGTTCATATTTTG 289321 |||| | | ||| ||| || || || | || |||| ||| || ||| | ||| | Sbjct 5662 ACTTTTCGTATCTAGCGGGTTCCTTCAAGAAACTGACAAACTCCATAATTTCCTCTTTGG 5721 Query 289322 CCTCATCACATCCTGCTACAT 289342 | || |||||||| || |||| Sbjct 5722 CTTCGTCACATCCAGCAACAT 5742 >seq1268 Length=25452 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875 ||||||| | ||| ||||||||| | || || || || || | ||||||||||||| Sbjct 13082 ATTTCTTTGAGACGAGGAACACCAAGAGTAACATTT---TTAGAAGAAACACCAGCAAAG 13138 Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA 301935 ||||| ||||| | ||| | |||||| | ||||| || ||| || |||| | | | Sbjct 13139 TGGAAGGTATTTAAAGTCATTTGAGTTGCTGGCTGTCCGATAGACTGAGCCGATAAAACA 13198 Query 301936 CCAACCATTTCTCCTGGTGCTACAATAG 301963 || |||||||| ||||| || |||| || Sbjct 13199 CCCACCATTTCCCCTGGGGCAACAAGAG 13226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471670566801589