Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq872 127 2e-24 seq356 107 1e-18 >seq872 Length=30969 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| |||||||||||||| || |||||||| | | || || Sbjct 26058 ACGGAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGACAAAGTACGGCC 26117 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | ||||| | ||||||||| || || || || || || Sbjct 26118 ATCCTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTT 26177 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| || || ||| |||| | | || ||| || || || || || || Sbjct 26178 ATCTTGGATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACCTCGAGGGTAAT 26237 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790 || || ||||||| ||||| ||||| ||||||||| || Sbjct 26238 GGTCTTACCAGTTAGTGTTTTGACAAAAATCTGCATTCTA 26277 >seq356 Length=31527 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || || ||||| || || ||||| || || | || || || ||| || Sbjct 31120 ACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGTCCATCTTCC 31061 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || || || | || | |||||||||||| || || || || || || || || Sbjct 31060 AATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGG 31001 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||||| ||||| |||| | || || ||| || || || || || || || || Sbjct 31000 ATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACCTCGAGGGTGATGGTCTTA 30941 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||||||||||||||| |||||||| Sbjct 30940 CCGGTTAAGGTTTTAACAAAAATCTGCAT 30912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385182594184377