Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2250 170 4e-37 seq356 141 2e-28 seq872 131 3e-25 >seq2250 Length=3934 Score = 170 bits (188), Expect = 4e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||||| || ||||| ||||||||||| ||||| || || ||||||| Sbjct 92 TACCACCTCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAG 151 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | || ||||| |||||||| ||||| || || || | || || ||||| | Sbjct 152 ATAAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTG 211 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | |||||||||||||| |||||||| ||| || ||||| ||||| || ||| || |||| Sbjct 212 GGATTCCTTCCTTATCCTGAATCTTCTGC-TTGACATTGTCAATAGTGTCAGAAGATTCT 270 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || | || || ||||| || || | ||||| || || ||||||||| Sbjct 271 ACCTCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCATT 321 >seq356 Length=31527 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 || ||| ||||| || |||||||| ||||| || || || ||||| ||| | | || || Sbjct 31124 CAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGTCCATC 31065 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| | ||| || || || ||||| |||||||| |||||||| || |||||||||||||| Sbjct 31064 TTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGGATTCCTTCCTTATC 31005 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || |||||| || || ||||| || | ||| || || || || | || || || Sbjct 31004 CTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACCTCGAGGGTGATGGT 30945 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || || || || ||||| |||||||| Sbjct 30944 CTTACCGGTTAAGGTTTTAACAAAAATCTGCAT 30912 >seq872 Length=30969 Score = 131 bits (144), Expect = 3e-25 Identities = 174/238 (73%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 82575 TATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTA 82634 || |||| ||| || | | ||| || || || || ||||| |||||||| || |||||| Sbjct 26039 TAACACC-ACCACCACGAAGACGGAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTA 26097 Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 |||||||| | | | | || || || | || || || |||||||| | | ||| ||| Sbjct 26098 TAATCAGACAAAGTACGGCCATCCTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTGA 26157 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATT 82753 ||||| || ||||||||||||||||| || || ||| || |||||||| || | ||| Sbjct 26158 TCTGGGGGGATTCCTTCCTTATCTTGGATTTTCTGC-TTAACATTTTCGATGGAATCGGA 26216 Query 82754 AGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || | || || ||||| || || | || || ||||| ||||||||| Sbjct 26217 AGACTCGACCTCGAGGGTAATGGTCTTACCAGTTAGTGTTTTGACAAAAATCTGCATT 26274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981729116383183