Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq356 95.1 1e-14 seq2250 93.3 4e-14 seq3686 82.4 7e-11 seq872 82.4 7e-11 >seq356 Length=31527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || || | ||||| || || ||||| |||||||| || |||| Sbjct 31057 TGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGGATC 30998 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 |||||||||| | || | | |||| | ||| || |||| ||||| ||| || ||| Sbjct 30997 TTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCG 30938 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || | ||||| || ||||||||||||||| Sbjct 30937 GTTAAGGTTTTAACAAAAATCTGCATGGCT 30908 >seq2250 Length=3934 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || || || || ||| |||| || ||||||||||| || ||||| |||||||| Sbjct 166 TCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTA 225 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||||| | |||| ||||| | | || || || | ||| | Sbjct 226 TCCTGAATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGATTCTACCTCAAGGGTAATT 285 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || || || || ||||| || |||||||||||||| ||| Sbjct 286 GTCTTACCAGTTAGAGTCTTAACGAAAATCTGCATTGCT 324 >seq3686 Length=51458 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 116472 GCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGA 116531 |||||| |||||| | |||| ||||| |||| || |||||| ||||| || || || | Sbjct 44839 GCACGGTTTCCACATCCACGCCTTTGGTGACAACACCAACGGTTGCACTTCTGCTGGTGG 44780 Query 116532 ACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGG 116591 |||| |||||| ||| || || | ||| || | || || ||||| |||||||| Sbjct 44779 TCACTACAACCCACACGGTGTTGATCATGCCGCTCCAACTGCTGCTGTTCGCCACGTCGG 44720 Query 116592 TGACCTGGGCAACATTGA 116609 ||| || || ||| |||| Sbjct 44719 TGATCTCGGTAACGTTGA 44702 >seq872 Length=30969 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || ||||| ||||| || || | | | ||||| | Sbjct 26068 AAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGACAAAGTACGGCCA-TCCTCCAA 26126 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || ||||| || || ||||| |||||||| || ||| Sbjct 26127 CTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGGAT 26186 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||||| | | || | | |||| | ||| || |||| ||| | ||| || || Sbjct 26187 TTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACCTCGAGGGTAATGGTCTTACC 26246 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||||||||| Sbjct 26247 AGTTAGTGTTTTGACAAAAATCTGCAT 26273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483373684600280