Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1268 104 6e-17 seq508 84.2 5e-11 >seq1268 Length=25452 Score = 104 bits (114), Expect = 6e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| || ||| ||||| |||| | || ||| | ||||| ||||| ||||| ||| Sbjct 15117 AGACATATGGTTGATGATGATGTGGTTATCTTTAATCGACAACCCTCACTCCATAAGATG 15058 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||||| ||| || ||||| | || | || ||| |||| || || | Sbjct 15057 TCTATGATGGGACATCGCGTTAAAGTCATGCCTTATTCCACTTTTAGATTGAACCTATCT 14998 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | |||||||| || ||||||||||| |||||||||||| | ||| |||||||| Sbjct 14997 GTCACCTCTCCTTATAACGCAGATTTTGATGGCGATGAAATGAATCTTCATCTACCTCAA 14938 Query 305486 TC 305487 || Sbjct 14937 TC 14936 >seq508 Length=30495 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||| |||| |||| | ||| || || || |||||||| ||||||||||| |||||| Sbjct 6460 ACTTTTAGATTTAATGAATGTGTCTGCACCCCCTATAATGCTGATTTTGATGGCGATGAA 6401 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||||| ||| |||||||| Sbjct 6400 ATGAATATACATTTACCTCAA 6380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186694238513917