Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq356 132 1e-25 seq2250 104 6e-17 seq872 95.1 3e-14 >seq356 Length=31527 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || || || ||||| | || || || ||| || Sbjct 30915 CAGATTTTTGTTAAAACCTTAACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCCGAT 30974 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | ||||| || ||||||||||| || || || |||||||| || || ||| Sbjct 30975 TCTATCGAAAACGTCAAGCAAAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCAGCAA 31034 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||||||||| ||||| |||||||||||| | ||| | | || |||||| || Sbjct 31035 AGACTTATCTTCGCCGGTAAGCAATTGGAAGATGGACGTACTCTTTCTGACTACAACATC 31094 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || ||||| || ||| | ||||||||||| || Sbjct 31095 CAGAAGGAATCTACCCTCCACTTGGTTTTGAGACTCCG 31132 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || ||||||||||| | ||| || ||||| || ||||||| || ||||||| | ||| Sbjct 31132 CGGAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTA 31073 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| ||||| |||||||||||||| | ||| ||| Sbjct 31072 CGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGA 31028 >seq2250 Length=3934 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || || | || || ||| ||||||||| | || Sbjct 305 AAGACTCTAACTGGTAAGACAATTACCCTTGAGGTAGAATCTTCTGACACTATTGACAAT 246 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || |||||||| || ||| || | ||||| ||| Sbjct 245 GTCAAGCAGAAGATTCAGGATAAGGAAGGAATCCCACCAGACCAGCAGCGTCTTATTTTC 186 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | |||||||| | ||||| | ||||||||| ||||||| || ||| Sbjct 185 GCTGGTAAACAACTTGAAGATGGCCGTACTTTATCTGATTACAACATCCAGAAGGAATCT 126 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| | || ||| | ||| || Sbjct 125 ACTCTTCACTTGGTATTGCGTCTTAGA 99 >seq872 Length=30969 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || || || | || || || ||| || Sbjct 26270 CAGATTTTTGTCAAAACACTAACTGGTAAGACCATTACCCTCGAGGTCGAGTCTTCCGAT 26211 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | ||||| || ||||| || || ||||| || |||||||| || || ||| Sbjct 26210 TCCATCGAAAATGTTAAGCAGAAAATCCAAGATAAGGAAGGAATCCCCCCAGATCAGCAA 26151 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| ||||| ||||||||||| ||||| | |||||| | ||||| || || Sbjct 26150 CGTTTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGTACTTTGTCTGATTATAATATC 26091 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || ||||| || |||||||| Sbjct 26090 CAAAAAGAATCCACTCTTCA 26071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181702737210037