Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq265 289 4e-73 >seq265 Length=13576 Score = 289 bits (320), Expect = 4e-73 Identities = 618/910 (68%), Gaps = 20/910 (2%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| ||||| || ||||| |||| ||||| ||||| || ||||| || || || | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || || | |||||||| || || || || ||| ||||| | |||| ||||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGACTTATAATGCTTTTCGAATCC 3890 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 || | ||| | ||| || || || || || ||| ||||| ||| || Sbjct 3889 CAAAGAGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGTT 3830 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || || || || || | || |||| |||||||| || || | || || Sbjct 3829 CATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAGC 3770 Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGA--TGCAATAAATG--TTTAA 39608 || || | || ||| | || | || || | ||| || | || | ||| | Sbjct 3769 ATCAGTGACGATGGATAGAA-TAGTT--TC-CTGGCTGGGCTTGTTAACAAGGCATTTGA 3714 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 ||| ||||| | ||||| || || ||||| |||| | ||| || ||||| |||| Sbjct 3713 ACAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAA 3654 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 |||| | ||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 3653 ATGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCAC 3594 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCA-AATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 |||||||| || || || | ||| || || | | |||||||||| ||||| | Sbjct 3593 TGAAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTG 3535 Query 39788 ---TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 | || ||||| | | ||||||||| ||| ||||| || | ||| || || || | Sbjct 3534 GAGTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCG 3475 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 | || ||||| || | | | | || ||| ||||||| | ||| ||||| || |||| | Sbjct 3474 ACTGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATA 3415 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 |||||||| ||||||||||| ||| ||||| || || || |||||||| || Sbjct 3414 GAGTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCC 3355 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 |||| || || || || | | ||| | | |||||||||| || |||||||||||| Sbjct 3354 TCAGGGATCTGGACTTCAGTTCCAAAGTTGGCAACCAAATTTTCGTTGACTATTCCATCA 3295 Query 40025 CTAGCGGCAAAAAATGCCAATACATGT--TTAATAAAATATTTTTCATCGGGTGTCAATT 40082 || || || ||||||| ||| | |||| || |||||| || |||| | || | || Sbjct 3294 CTGGCTGCGAAAAATG-CAAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAGTT 3237 Query 40083 TATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 |||| ||||| | | | || | |||| ||| |||||||| | ||||| || | Sbjct 3236 TATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCTGG 3177 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATC 40199 | || |||||||| ||||| | ||| || || | | | |||||| || | ||| || | Sbjct 3176 CTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAACC 3117 Query 40200 TATTTGGATT 40209 | ||||| || Sbjct 3116 TGTTTGGGTT 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686841852151080