Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6677 149 5e-31 seq2394 86.0 5e-12 >seq6677 Length=33897 Score = 149 bits (164), Expect = 5e-31 Identities = 380/574 (66%), Gaps = 26/574 (5%) Strand=Plus/Minus Query 19312 GATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCG 19371 ||| ||||| | |||| || | ||||||| || |||| | ||||| || || Sbjct 15706 GATCTCATTGAGAAATTAGGTATTCAACATGTCAAGGGGATTTTATTGTATGGCCCTCCA 15647 Query 19372 GGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCT--- 19428 ||| ||||||||| ||||| || || || | | ||| | | |||| | | Sbjct 15646 GGTACTGGAAAAACTTTAATGGCTAGGCAAATAGGAAAAATGTT----AAACTCCGTTGA 15591 Query 19429 -CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAA 19487 |||| ||||| || ||||||||||| ||||| |||| || || || || |||||||| Sbjct 15590 ACCCATTATTGTCAACGGTCCTGAAATTTTAAACAAATTCGTTGGCCAGTCTGAAGAAAA 15531 Query 19488 TGTACGACGTTTGTTTGCTGACGCTGAAGAAGAA-----CAAAAACGTTTAGGGCGCAAA 19542 | | || |||||||| ||| ||||||||| | |||| | | | | || Sbjct 15530 TATCAGAAAACTGTTTGCTCCCGCAGAAGAAGAATATCGCGAAAAGGGTGATG-----AA 15476 Query 19543 AGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT--- 19599 ||| | || ||||| || | |||||| | || ||||||||||| ||| | ||| Sbjct 15475 AGTCAACTTCATATTATTATTTTCGATGAACTTGATGCAATCTGTAAACAACGTGGTGGC 15416 Query 19600 TCTGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656 | ||| ||| || || ||| |||||||||| || || || || ||| | ||| Sbjct 15415 CGTAGTGACAATACCGGTGTTGGTGATTCTGTTGTCAACCAGCTGCTATCCAAAATGGAC 15356 Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATA 19716 ||||| ||||| | || || ||||| | || || ||||| || || ||| || || Sbjct 15355 GGTGTCGACCAATTAAACAACATTTTGTTGATAGGAATGACAAACCGAAAGGATTTGATT 15296 Query 19717 GA-CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGA 19775 || || ||| || || || ||||| | ||| | | || ||| || |||||||| Sbjct 15295 GATGAGGCTCTTCTT-CGTCCTGGTCGTCTTGAAGTTCATATAGAAGTTGGTTTACCCGA 15237 Query 19776 TGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCT 19835 ||| || ||| || ||||| | || ||||| | || ||||| |||||| | | Sbjct 15236 CGAAAAGGGTCGTTTGCAAATTATTGGAATTCATACCTTAAAAATGCGTCAAAATCATAT 15177 Query 19836 TTTAAATGACGATGTAGATCTAGAAGAAATTGCA 19869 ||||| | ||||| ||||| | ||| | ||| Sbjct 15176 CTTAAACAAGGATGTCGATCTCCAGGAATTAGCA 15143 >seq2394 Length=52847 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| ||||||||||| |||| ||||||||| || ||||| | |||||||||| ||| || Sbjct 19975 AATTGTCATACGTGATGGAATAGCATGCGGGTTGATAATAATATCTGGCACTATCCCTTC 20034 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCGTACA--TCATTCCACAAGTTCCTTTTTGAGCG 115148 |||| ||| ||||| || | | || || | | || ||| |||||||| || || Sbjct 20035 TGCTGAGAATGGCATATCCTCC--ATTCTATATGTGATACCAATTGTTCCTTTCTGCCCG 20092 Query 115149 GTAAACGATGCAAATTTATCACCAATCT 115176 |||||||| ||||| ||||||| Sbjct 20093 TGGCGGGATGCAAACTTATCTCCAATCT 20120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397418231370985