Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2250 132 4e-26 seq356 131 1e-25 >seq2250 Length=3934 Score = 132 bits (146), Expect = 4e-26 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 26977 ATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAG 27036 |||| | || |||||||| || || || ||||| || || ||| | ||||| ||||| | Sbjct 331 ATTTTTTAGCAATGCAGATTTTCGTTAAGACTCTAACTGGTAAGACAATTACCCTTGAGG 272 Query 27037 TGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATAC 27096 | ||| | || ||| | ||||| | ||||| || || ||||| || || ||||| || | Sbjct 271 TAGAATCTTCTGACACTATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAAGGAATCC 212 Query 27097 CACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT 27156 |||| || || |||||| | || | ||| || |||||| | ||||| | || | | Sbjct 211 CACCAGACCAGCAGCGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTTTAT 152 Query 27157 CCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 | ||||||||||| || ||||| || || | || ||||| |||||| | | ||||| | Sbjct 151 CTGATTACAACATCCAGAAGGAATCTACTCTTCACTTGGTATTGCGTCTTAGAGGTGGTA 92 Query 27217 T 27217 | Sbjct 91 T 91 >seq356 Length=31527 Score = 131 bits (144), Expect = 1e-25 Identities = 178/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 26970 ttttttAATTTATAC---GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATT 27026 |||||| ||||| | ||||||||||| ||||| ||||| | ||||| ||| | || Sbjct 30891 TTTTTTTATTTACAGTGAGCCATGCAGATTTTTGTTAAAACCTTAACCGGTAAGACCATC 30950 Query 27027 ACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAA 27086 || || || || || | ||||| || || || | ||||| ||||| || || || || Sbjct 30951 ACCCTCGAGGTTGAGTCTTCCGATTCTATCGAAAACGTCAAGCAAAAGATCCAGGATAAG 31010 Query 27087 GAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGT 27146 ||||| || || || ||||| || | | || | |||||| || ||||||||||| | Sbjct 31011 GAAGGAATCCCCCCAGATCAGCAAAGACTTATCTTCGCCGGTAAGCAATTGGAAGATGGA 31070 Query 27147 TCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTG 27206 || |||| || |||||||| || ||||| || ||| | || ||||||||| | | Sbjct 31071 CGTACTCTTTCTGACTACAACATCCAGAAGGAATCTACCCTCCACTTGGTTTTGAGACTC 31130 Query 27207 CGGGGTGG 27214 || ||||| Sbjct 31131 CGTGGTGG 31138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434876011765440