Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2250 109 4e-19 seq872 100 2e-16 seq356 100 2e-16 >seq2250 Length=3934 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||||||||| || || || || || || || || || || || || || | Sbjct 321 AATGCAGATTTTCGTTAAGACTCTAACTGGTAAGACAATTACCCTTGAGGTAGAATCTTC 262 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||| || || ||||| | || ||||| || Sbjct 261 TGACACTATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAAGGAATCCCACCAGACCA 202 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || |||||||| ||||| | || |||||| |||||||| Sbjct 201 GCAGCGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTTTATCTGATTACAA 142 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 141 CATCCAGAAGGAATCTAC 124 >seq872 Length=30969 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || |||||||||||| || ||||| || || || || || || || ||||| || || || Sbjct 26277 TAGAATGCAGATTTTTGTCAAAACACTAACTGGTAAGACCATTACCCTCGAGGTCGAGTC 26218 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || | | |||| | || || ||||| || || ||||| | || ||||| Sbjct 26217 TTCCGATTCCATCGAAAATGTTAAGCAGAAAATCCAAGATAAGGAAGGAATCCCCCCAGA 26158 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || ||||| || |||||||| || || |||| || | || ||||| ||||| Sbjct 26157 TCAGCAACGTTTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGTACTTTGTCTGATTA 26098 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || |||||||| ||||| | ||||| || Sbjct 26097 TAATATCCAAAAAGAATCCACTCTTCATTTGGT 26065 >seq356 Length=31527 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||||||| | || || || || ||||| ||||| ||||| || | Sbjct 30912 ATGCAGATTTTTGTTAAAACCTTAACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 30971 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || ||||| || || || ||||| | || |||||||| Sbjct 30972 GATTCTATCGAAAACGTCAAGCAAAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCAG 31031 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || ||||| || ||| ||||||| | ||| ||| | || |||||| Sbjct 31032 CAAAGACTTATCTTCGCCGGTAAGCAATTGGAAGATGGACGTACTCTTTCTGACTACAAC 31091 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || || || || || | || || ||||| || Sbjct 31092 ATCCAGAAGGAATCTACCCTCCACTTGGTTTTGAG 31126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337977480320876