Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7797 161 2e-34 seq872 138 3e-27 seq356 131 4e-25 >seq7797 Length=106654 Score = 161 bits (178), Expect = 2e-34 Identities = 210/288 (73%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTA-TAGGTACTATATTTTCTATGAT 7499 || |||||||||||||||| | |||||||| |||| |||||||| ||||||| | | Sbjct 66871 ACATTATATTTAATATTTGCTTTATTTTCTGG-ATTATTAGGTACTTTATTTTCGCTAGT 66813 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 |||| ||||||||| | || ||| ||||||||| |||||| ||| |||| Sbjct 66812 AGTAAGATTAGAATTAATGGGACCTGGTGTTCAAATATTACAAGGTAATCATCAATTTTA 66753 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || | |||| || ||||| | | ||| |||||| |||| ||||||| | | | Sbjct 66752 TAATGTAGTAGTTACTGCTCATGCAATGTTAATGGTTTTCTATTTTATTATGCCTGCTTT 66693 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || |||| || | || ||||||| |||||||| |||||||| || Sbjct 66692 AATTGGAGGTTTAGGTAATTATTTAATACCAGTAATGATAGGTGCTCCGGATATGGCATT 66633 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| || | || || ||| ||||| ||| |||| ||||| ||||| Sbjct 66632 TCCTAGATTAAATAACATATCATTTTGGTTATTACCTCCTTCTTTATT 66585 >seq872 Length=30969 Score = 138 bits (152), Expect = 3e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | || ||||||||||||||||||| ||| ||||| | |||||| Sbjct 26052 ACGAAGACGGAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGACAAAGT 26111 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | |||||| || || ||||| | ||||| || || || || || || Sbjct 26112 ACGGCCATCCTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCC 26171 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| |||||||| || ||||| ||| |||||||| || || | || || || | Sbjct 26172 TTCCTTATCTTGGATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACCTCGAG 26231 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 || || ||||| || || | ||||| | || | |||||| || Sbjct 26232 GGTAATGGTCTTACCAGTTAGTGTTTTGACAAAAATCTGCATTCTA 26277 >seq356 Length=31527 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| || | |||||| || ||||| || |||| ||||| || | | ||| Sbjct 31133 ACGGAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGT 31074 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || ||||||||||||| ||| || || || || || || Sbjct 31073 ACGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGGATTCC 31014 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||||||||| || |||||| | || || | || || || | Sbjct 31013 TTCCTTATCCTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACCTCGAG 30954 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || || ||||| Sbjct 30953 GGTGATGGTCTTACCGGTTAAGGTTTT 30927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192412067251118