Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq265 178 1e-39 >seq265 Length=13576 Score = 178 bits (196), Expect = 1e-39 Identities = 555/845 (66%), Gaps = 21/845 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| || |||||||| || || || | | ||||| | ||||| || || || Sbjct 3981 ACGCGCTTCTCAAAGAAATTGGTCTTACCCTGCATGGAAATCATATCCATGAAGTCGAAT 3922 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || ||| || ||||| ||||| | | || || | ||| || || ||||| Sbjct 3921 GGGTTGATTGACTTATAATGCTTTTCGAATCCCAAAGAGACTAACAAACGATCGGCTACG 3862 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGC 4450 || || ||||| |||| ||| || | | ||| || ||||| | | || || || | Sbjct 3861 AACTCGATATATTGGCACATCAGGACACTGTTCATACCAATCAGAGAGCAGGGG-AGGGA 3803 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || || ||||||||||| || || || || || |||| || | || | || Sbjct 3802 GTCGGTTAAAAACTCTTGCTCAATCACGACAGCATCAGTGACGATGGATAGAATAGTTTC 3743 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || || || || | | || ||||| || || |||| || || | || Sbjct 3742 CTGGCTGGGCTTGTTAACAAGGCATTTGAACAACAAGCAACCAAAGTCTGTGTGGAGTCC 3683 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 ||||||| || ||||| ||||| ||||| || ||||||||||| | ||| | ||| || Sbjct 3682 CTCGTCTCGGCAAATCAACTCGTTTGAAAATGTCAATCCGGGCATAAGACCACGCTTCTT 3623 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 |||||||| || || ||||| |||||| ||||| || || || || || || || Sbjct 3622 GAGCCAAAAGATGGCAGCAAAAGACCCACTGAAGAAGATTCCCTCAACAACGCAGAAGGC 3563 Query 4691 TACTAATCGGGACCCGAACGA---GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 | |||| ||||| ||||| ||| | ||||||| | |||||| || Sbjct 3562 GGCCAATCTCTCTCCGAAACTTTTGCTGGA---GTCATCGATCCATTCCAGTGCCCAATT 3506 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--ATTTACTTTTTTCA 4805 ||| || || || | || || || | | |||||||| | | | || | | | Sbjct 3505 AGCCTTCTTTTTGATACATGGGATATTTGCGACTGCGTTAAAAAGGAAGT-CTCTCTCCT 3447 Query 4806 AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 || |||| ||||| || || || | | |||||||| || || |||||| Sbjct 3446 CATTA-TCTTTGATATAGGTATCAATCAACATAGAGTACATTTCGCTGTGGATGTTTTCT 3388 Query 4866 ATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC-GTTACAAAA 4924 || ||||| || || || || |||||||| || | | || ||||| ||| |||| Sbjct 3387 ATCATTATCTGGAAGCCATAGAAACATCTAGCCTCAGGGATCTGGACTTCAGTTCCAAAG 3328 Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT- 4983 | | | || || |||||||| ||||| || ||||||||||| ||||| || | || | Sbjct 3327 T-TGGCAACCAAATTTTCGTTGACTATTCCATCACTGGCTGCGAAAAATGCAAGAATGTT 3269 Query 4984 -GAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTGGGGCAAATCTTTA 5039 |||| ||| | || ||||| | | ||| |||| |||||| | || | | Sbjct 3268 CTTGATAAAAAAT-CT-TTCGTTATCAGTTAGTTTATTTTCCCAGTGCTGGGTGTCCTGA 3211 Query 5040 GTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAA 5099 | ||||||||||||||| |||||||| || ||||| || ||||| ||||| |||| Sbjct 3210 GATAAATCAACTTCTTCGACAGTCCAGAAGCTGGCTTCGGCCTTTTTATACATTTGCCAA 3151 Query 5100 ATATC 5104 || || Sbjct 3150 ATCTC 3146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427009019211401