Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq265 279 7e-70 >seq265 Length=13576 Score = 279 bits (308), Expect = 7e-70 Identities = 618/912 (68%), Gaps = 24/912 (3%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||| ||||| || || || |||| || || ||||| || ||||| || || || | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCC 47956 || || || | ||||| || || ||||| || | || |||||| |||| ||||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGACTTATAATGCTTTTCGAATCC 3890 Query 47957 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATT 48016 || | || | ||| || ||||| || |||||| ||||| ||| || Sbjct 3889 CAAAGAGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGTT 3830 Query 48017 CATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGC 48076 ||| || || || || || | || || | ||||||||| || || |||||| Sbjct 3829 CATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAGC 3770 Query 48077 ATCCACTATTATCGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAAC 48134 ||| | || ||| | ||||||| || || || |||| || || ||| Sbjct 3769 ATCAGTGACGATGGATAGAATAGTTTCCTGGCTGGGCTTGTTAACAAGGCAT--TTGAAC 3712 Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 | || || |||| || || || || || |||| | ||| || ||||| |||||| Sbjct 3711 AACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAAAT 3652 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 || | |||||||| || ||||| || ||||||||||| || || || ||||| ||| Sbjct 3651 GTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCACTG 3592 Query 48255 AAGAATATGCCTTCTACGGCCGCA-AATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT 48313 ||||| || || || || | ||| || |||| | |||||||||| |||| || | Sbjct 3591 AAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCCAATCTCTCTCCGAAACTT--TTGCTG 3535 Query 48314 GTGT-ATCCA-CCGTT---GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 | || ||| | || || ||||||||| ||||||||| || | ||| || || || | Sbjct 3534 GAGTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCG 3475 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGA 48428 | || ||||| || |||| | | || | ||||||| | || ||||| || || | | Sbjct 3474 ACTGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATA 3415 Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 ||||||||| ||| || ||||| || ||||| || || || |||||||| || Sbjct 3414 GAGTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCC 3355 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTT--CAGCCAAATTCTCATTTACTATTCCAT 48546 || | |||||| || || || | ||| ||| || ||||||| || || |||||||||| Sbjct 3354 TCAGGGATCTGGACTTCAGTTCCAAA--GTTGGCAACCAAATTTTCGTTGACTATTCCAT 3297 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGT--TTAATAAAATATTTTTCGTTGGAAGTCAG 48604 |||| || || |||||||| || | |||| || |||||| || ||||||| ||| || Sbjct 3296 CACTGGCTGCGAAAAATGC-AAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAG 3239 Query 48605 TTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGA 48661 |||||| ||||| | | | || | |||| ||| |||||||| | ||||| || Sbjct 3238 TTTATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCT 3179 Query 48662 TGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || || || ||||||||||| | ||| || || | | |||||||| | ||| || Sbjct 3178 GGCTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAA 3119 Query 48722 TCTATTTGGATT 48733 || ||||| || Sbjct 3118 CCTGTTTGGGTT 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694601095842080