Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq265 266 5e-66 >seq265 Length=13576 Score = 266 bits (294), Expect = 5e-66 Identities = 614/910 (67%), Gaps = 20/910 (2%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||| ||||| || ||||| |||| || || ||||| || ||||| || || || | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATT-AGTAACATTATAAAtttttttAAATC 46444 || || || | ||||| || || || || || | | || |||||| |||| |||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGAC-TTATAATGCTTTTCGAATC 3891 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAAT 46504 | || | || | ||| || ||||| || ||||| ||||| ||| | Sbjct 3890 CCAAAGAGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTGT 3831 Query 46505 TCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAG 46564 |||| || || || | || || | || || | ||||||||| ||||| ||||| Sbjct 3830 TCATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACAG 3771 Query 46565 CATCCGATATTATCGATGTTACTGTTTCCTCACTTGG-TGGATGCATCAAATG-TTTAAA 46622 |||| | | || ||| | ||||||| || || | | | | ||| ||| || Sbjct 3770 CATCAGTGACGATGGATAGAATAGTTTCCTGGCTGGGCTTGTT--AACAAGGCATTTGAA 3713 Query 46623 CATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAA 46682 || || || |||| || || || || || |||| | ||| || ||||| ||||| Sbjct 3712 CAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAAA 3653 Query 46683 TGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGA 46742 ||| | || ||||| || |||||||| ||||||||||| || || || ||||| ||| Sbjct 3652 TGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCACT 3593 Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--GCATCA 46800 ||||| || || || ||| | ||| ||| | | |||||||||| |||| || | Sbjct 3592 GAAGAAGATTCCCTCAACAACGCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTGGA 3533 Query 46801 TT-ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTAT 46859 | || ||||| | ||||||| |||||| || || | ||| || || || | | Sbjct 3532 GTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCGAC 3473 Query 46860 AGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACT 46919 || ||||| || |||| | | || ||| ||||||| | ||| ||||| || || | | Sbjct 3472 TGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATAGA 3413 Query 46920 ATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 46979 |||||||| || |||||||| || ||||| || || || |||||||| || || Sbjct 3412 GTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCCTC 3353 Query 46980 AGTAATCTGTACCTCTGTACAAAATCGTT--CAGACAAATTCTCATTCACTATTCCATCA 47037 || ||||| || || || | ||| ||| || |||||| || || |||||||||||| Sbjct 3352 AGGGATCTGGACTTCAGTTCCAAA--GTTGGCAACCAAATTTTCGTTGACTATTCCATCA 3295 Query 47038 CTAGCAGCAAAAAATGCCAATACATGT--TTAATAAAATATTTTTCATCGGTAGTCAGTT 47095 || || || ||||||| ||| | |||| || |||||| || |||| | ||| |||| Sbjct 3294 CTGGCTGCGAAAAATG-CAAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAGTT 3237 Query 47096 TATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACG 47152 |||| ||||| | | | || | |||| ||| |||||||| | |||||||| | Sbjct 3236 TATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCTGG 3177 Query 47153 CCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATC 47212 | || || ||||||||||| | ||| || || | | | || || || | ||| || | Sbjct 3176 CTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAACC 3117 Query 47213 TATTTGGATT 47222 | ||||| || Sbjct 3116 TGTTTGGGTT 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712864915631040