Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2250 161 2e-34 seq872 113 1e-19 seq356 93.3 1e-13 >seq2250 Length=3934 Score = 161 bits (178), Expect = 2e-34 Identities = 162/209 (78%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || || |||||||||||||| | |||||| | |||||||| | Sbjct 114 CAAG-TGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGATAAAGTACGGCCATCTTCAA 172 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || ||||| ||||| | ||||||||| | | |||||||||||| || |||| Sbjct 173 GTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGAA 232 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || |||||| | || | |||| ||| ||||| ||||| ||||| || || | Sbjct 233 TCTTCTGCTTGACATTGTCAATAGTGTCAGAAGATTCTACCTCAAGGGTAATTGTCTTAC 292 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || |||||||| ||||| | ||||||| Sbjct 293 CAGTTAGAGTCTTAACGAAAATCTGCATT 321 >seq872 Length=30969 Score = 113 bits (124), Expect = 1e-19 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||||||| || ||||||||||| || ||||| | ||||| | ||||| Sbjct 26061 GAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGACAAAGTACGGCCATC 26120 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | || ||||| ||||| | | ||||| || | | |||||||||||| || Sbjct 26121 CTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTATC 26180 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| || || ||| | || | | || ||| ||| || || || ||||| || Sbjct 26181 TTGGATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACCTCGAGGGTAATGGT 26240 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || || || || || || || || | ||||||| || Sbjct 26241 CTTACCAGTTAGTGTTTTGACAAAAATCTGCATTCTA 26277 >seq356 Length=31527 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | || | || || ||||| || || ||||||||||| || | | ||| | Sbjct 31130 GAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACG 31071 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || |||||||||||||| || ||||| || | | ||||||||| Sbjct 31070 TCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGGATTCCTTC 31011 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || ||||| ||||| | || | || ||| ||| || || || || Sbjct 31010 CTTATCCTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACCTCGAGGGT 30951 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || | || || || || | |||||| Sbjct 30950 GATGGTCTTACCGGTTAAGGTTTTAACAAAAATCTGCAT 30912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153705534383787