Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq872 152 1e-31 seq2250 132 1e-25 seq356 132 1e-25 seq265 96.9 7e-15 >seq872 Length=30969 Score = 152 bits (168), Expect = 1e-31 Identities = 190/256 (74%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| ||| | ||| |||||||||||| || || |||| Sbjct 26046 ACCACCACGAAGACGGAGGACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGA 26105 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| | || || |||||||||||||||||||| || || || Sbjct 26106 CAAAGTACGGCCATCCTCCAACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGG 26165 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || ||||| |||||||| || ||| || || | ||||| | || |||| |||| Sbjct 26166 GATTCCTTCCTTATCTTGGATTTTCTGC-TTAACATTTTCGATGGAATCGGAAGACTCGA 26224 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACA 283110 | ||||| || || |||||||| || | || || || || ||||||||| | | || | Sbjct 26225 CCTCGAGGGTAATGGTCTTACCAGTTAGTGTTTTGACAAAAATCTGCATTCT-AGATTCG 26283 Query 283111 AATAttt---ttttAA 283123 ||||||| |||||| Sbjct 26284 AATATTTACGTTTTAA 26299 >seq2250 Length=3934 Score = 132 bits (146), Expect = 1e-25 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || | ||||| || | || ||| || ||||||||||| |||| Sbjct 93 ACCACCTCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGA 152 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || |||||||| || || || || | ||| || ||||| || Sbjct 153 TAAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTCTGGTGG 212 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || ||||| || || ||||| ||| || || | || |||||||| |||| ||| | Sbjct 213 GATTCCTTCCTTATCCTGAATCTTCTGC-TTGACATTGTCAATAGTGTCAGAAGATTCTA 271 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | || || || || |||||||| || | |||||||||||| ||||||||| Sbjct 272 CCTCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCATT 321 >seq356 Length=31527 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | | |||| || | || ||| || |||||||||||||||| Sbjct 31139 ACCACCACGGAGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGA 31080 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | ||| || ||||| ||||| | | ||| || || || Sbjct 31079 AAGAGTACGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGG 31020 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| || ||||||||| || ||| | ||||||| || |||| || || Sbjct 31019 GATTCCTTCCTTATCCTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAAC 30960 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| || || || ||||| || |||||||| Sbjct 30959 CTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTAACAAAAATCTGCAT 30912 >seq265 Length=13576 Score = 96.9 bits (106), Expect = 7e-15 Identities = 168/243 (69%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 |||||||| || | || | | ||| | ||||| | |||| | | || ||| | Sbjct 3758 ATCGTCACTGATGCTGTCGTGATTGAGCAAGAGTTTTTAACCGACTCCCTCCCCTGCTCT 3817 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || || || ||||| || || ||| | ||||||||||| |||||||| |||||| | Sbjct 3818 CTGATTGGTATGAACAGTGTCCTGATGTGCCAATATATCGAGTTCGTAGCCGATCGTTTG 3877 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 || || | | || | ||| || ||||| || | ||||| |||| || ||||| Sbjct 3878 TTAGTCTCTTTGGGATTCGAAAAGCATTATAAGTCAATCAACCCATTCGACTTCATGGAT 3937 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAG 230401 | ||||| | ||||| || || || ||||| || ||||| ||||| ||||| || ||| Sbjct 3938 ATGATTTCCATGCAGGGTAAGACCAATTTCTTTGAGAAGCGCGTCAGTGATTACCAGAAG 3997 Query 230402 GCC 230404 ||| Sbjct 3998 GCC 4000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046634631735238