Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2250 118 8e-22 seq872 107 1e-18 seq356 93.3 3e-14 >seq2250 Length=3934 Score = 118 bits (130), Expect = 8e-22 Identities = 169/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | ||| |||| |||||| || ||||| ||||||||||| Sbjct 87 TTGCATACCACCTCTAAGACGCAATACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTA 146 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | || | || || || || || || || || || | ||||||||| || Sbjct 147 ATCAGATAAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGCTGCTGGTC 206 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 || || | |||||||| ||| ||||||||||| || ||| | || ||||| | Sbjct 207 TGGTGGGATTCCTTCCTTATCCTGAATCTTCTGCTTGACATTGT--CAATAGTGTCAGAA 264 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 265 GATTCTACCTCAAGGGTAATTGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCAT 320 >seq872 Length=30969 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| ||| || |||||||| || ||||| | | || | || ||| Sbjct 26065 ACCAAATGAAGAGTGGATTCTTTTTGGATATTATAATCAGACAAAGTACGGCCATCCTCC 26124 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| ||||||||||||||||| |||||||||| || | |||||||| || Sbjct 26125 AACTGCTTACCGGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGG 26184 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || |||||||| | || | |||| |||| || || ||||| | ||||| ||||| Sbjct 26185 ATTTTCTGCTTAACATTTTCGATGGAATCGGAAGACTCGACCTCGAGGGTAATGGTCTTA 26244 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || || || ||||| Sbjct 26245 CCAGTTAGTGTTTTGACAAAAATCTGCAT 26273 >seq356 Length=31527 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||| |||| ||| || || ||||| ||||||||||| || | || || Sbjct 31129 AGTCTCAAAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGT 31070 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||| ||||| ||||| ||||| | | |||||||||| || | |||||| Sbjct 31069 CCATCTTCCAATTGCTTACCGGCGAAGATAAGTCTTTGCTGATCTGGGGGGATTCCTTCC 31010 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||||| | || | || | |||| || || ||||| | || Sbjct 31009 TTATCCTGGATCTTTTGCTTGACGTTTTCGATAGAATCGGAAGACTCAACCTCGAGGGTG 30950 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| || || | ||| || || || || |||||| Sbjct 30949 ATGGTCTTACCGGTTAAGGTTTTAACAAAAATCTGCATG 30911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359956191574749