Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 197 3e-45 seq3 179 8e-40 seq12 165 2e-35 seq45 114 3e-20 seq49 95.1 3e-14 >seq4 Length=1091825 Score = 197 bits (218), Expect = 3e-45 Identities = 463/687 (67%), Gaps = 30/687 (4%) Strand=Plus/Minus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||||||||||| ||||||||||||||| ||||| | ||| || || || || ||||| | Sbjct 175599 GTCTTCACCGGTGGCATAACGCCATTGAATATATTCGTTTGGCGTAATATCCAGATGCTT 175540 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||| || || |||||||||||||| || || || |||| |||| || ||||||||||| Sbjct 175539 CTCAATATGATGGAAAGCATGCTGCGCAACATAGGCAATGCGCAGGTTGGGATGCTTCCA 175480 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 || |||| | || || | | ||||| |||| ||| || || || || || Sbjct 175479 CACCGTACCTTCCGAGGGCTCGAGCTCACCCGTCAGCAACTTGATAAGTGTTGACTTGCC 175420 Query 319176 CGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTT 319235 |||||||| || | ||| ||| | || ||||| ||||| | || Sbjct 175419 TGCACCGTTCGGACCAATGACAGCGACGCGCGACGCGAGCGA-------GCATTG-CATT 175368 Query 319236 GTCAAAGATT--AGTT--TTTCCGTAC----CCGGATACTTGAACCCCACACCGCGTAGC 319287 || | || || | || | || | | || ||| ||| ||||| | | Sbjct 175367 GTGATCTTTTTGAGCTGCTTGCGGTTCGAGCCGGGGTACGAGAAGTCCACATCCTTCATT 175308 Query 319288 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 319347 || | ||||| || ||||||| ||| ||||||||| | || |||||||| || | Sbjct 175307 TTGAGAATGGCGCGCTCCTTCGTCTTGACACCCTCGAGCATGCCTGGCTCGGGAAATCTA 175248 Query 319348 CACGTGGTCTT---CGTCTCGGTAAGGGCGTAGTA--ACTCGCTGATTCGGGACGCTTCT 319402 | || ||| || |||| || | |||||| ||| || |||||| ||||| Sbjct 175247 AAGGTAATCTGGGCCGCCTCG---AGCGAGTAGTAGGACT-GCGCGCGCGGGAC-CTTCT 175193 Query 319403 TCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGA 319462 | || || ||||||||||| |||||||| ||| || || ||| |||||||||| Sbjct 175192 TGACAAATTCGGACAGATTACCCTTGTAGCGCTTGAGTTTGTAGTTGCCCTCGTAATGGA 175133 Query 319463 TAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAA 319522 | ||| | |||| ||||||||| || |||||||| ||||| | | | | | | Sbjct 175132 TGATATCCGAACAAATGTGGTCGAGGAAACCCGAGTCGTGCGACACGACGATGGATGTCA 175073 Query 319523 CGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAAAGATG 319580 || ||| | | || || ||| ||| || | ||| ||||||| || ||||| Sbjct 175072 CGCTCTTCAAGCCGAGCAAGTAGTTC--TCGAGCCATGCCACGTTAACGACGTCGAGATG 175015 Query 319581 GTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGC 319640 ||||||||| ||||| || |||| | | ||||||| ||||||||| || || || || Sbjct 175014 GTTGGTCGGTTCGTCGAGCAGCAAGATATCGGCGTTCATGAGCATTGCCCGAGCCAGGGC 174955 Query 319641 GAGTTTCATTTTCCACCCTCCGGAAAG 319667 ||| ||||| ||||| || || ||||| Sbjct 174954 GAGCTTCATCTTCCAGCCACCTGAAAG 174928 >seq3 Length=1474401 Score = 179 bits (198), Expect = 8e-40 Identities = 458/686 (67%), Gaps = 12/686 (2%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 |||| ||||||||| | |||||| ||||| || || |||| |||||| || ||| || Sbjct 787900 CTCTCGGTCTTCACCTGTGGCATAGCGCCACTGAATGTACTCGTTGGGCGTAGAGTCGAG 787959 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| | ||| || ||||||||||||||||| || || || |||| |||| || || || Sbjct 787960 ATGCTTCTCAATATGGTGGAAAGCATGCTGCGCGACATAGGCAATGCGCAAGTTGGGGTG 788019 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 ||||| ||| || | | ||||||||| || || || | ||| ||||| ||| Sbjct 788020 TTTCCATACAGAGCCTGTCTGGCCTTCCATTTCACCAGTCAGTAGCTTGATGAGAGTGGA 788079 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCAT- 319228 || || |||||||| || | || ||| | || |||||| || |||| Sbjct 788080 CTTGCCAGCACCGTTGGGACCAATGACGGCGACACGTGAAGACAGCGAGCACT--GCATG 788137 Query 319229 -TCACGTTGTCAAAGATTAGT-TTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAG 319286 | | ||| | || | | || |||| ||||| |||| ||| | || | Sbjct 788138 CTGATGTTCT-TCAGCTGCTTCTTACCCGTGCCCGGGTACTGGAAGTCGACGTTCTTCAT 788196 Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 319346 ||| | |||||| || ||||| | ||||||||||||| | || ||||||||||| Sbjct 788197 CTTGACGATGGCGCGCTCCTTGGTCTTGATACCCTCGAGCAGACCCGGCTCGGGGAAGCG 788256 Query 319347 CCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCAC 319406 ||| || ||| || || | |||||| || | || |||||| || Sbjct 788257 GAACGATAGCTGCGTGTCTTCGAGCGAATAGTAAGCGGCGGCCGAAGGCACCTTCTTGAC 788316 Query 319407 GAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAAT 319466 ||||||||||| || |||||||| ||| ||||| ||| ||||||||||| || Sbjct 788317 AAACTCGGACAGGTTGCCCTTGTAGCGCTTGAGCTTGTAGTTCTTCTCGTAATGGATGAT 788376 Query 319467 AGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTC 319526 | | ||| || ||| ||||| || |||||||| || || || | | | | || Sbjct 788377 ATCAGAGCAGACGTGGTCAAGGAAACCAGAGTCGTGGGAGACGATGATGGATGTGACAGT 788436 Query 319527 CTTAAGGTTGATCAGGTA-TTCAATC-AACCACCTCACGTTAGAC-ACAGAAAGATGGTT 319583 ||| || | ||||| ||| || | ||| || || ||| ||| |||||||| Sbjct 788437 CTTGAGACCAAGAAGGTAGTTC--TCGAGCCATGCAACATT-GACAACATCCAGATGGTT 788493 Query 319584 GGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAG 319643 || ||||| ||||| | || | | ||||||| ||||| || || || || || || Sbjct 788494 AGTAGGCTCATCAAGCAACAAGATATCCGCGTTCATTAGCATGGCGCGGGCGAGTGCCAG 788553 Query 319644 TTTCATTTTCCACCCTCCGGAAAGAG 319669 |||||| ||||| || ||||| |||| Sbjct 788554 TTTCATCTTCCAGCCACCGGACAGAG 788579 >seq12 Length=4600585 Score = 165 bits (182), Expect = 2e-35 Identities = 448/676 (66%), Gaps = 10/676 (1%) Strand=Plus/Minus Query 318997 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 319056 |||||||||| || |||||||| ||||| |||| |||||| || ||| || || | | Sbjct 4525499 TCTTCACCGGTAGCGTAACGCCACTGGATGTACTCGTTGGGGGTAGAGTCCAGGTGCTTC 4525440 Query 319057 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 319116 || || ||||||||||| ||||| || ||||| || | ||| | || ||||||||||| Sbjct 4525439 TCAATATGGTGGAAAGCGTGCTGGGCGACGTAGGCGATACGGAGGTTGGGATGCTTCCAG 4525380 Query 319117 ACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCC 319176 || ||||| | | || | | || || || | ||| || |||||| || || Sbjct 4525379 ACGGAACCGACGTCAGACTCGAGCTCACCGGTAAGGAGCTTGATAAGGGTGGACTTGCCA 4525320 Query 319177 GCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTG 319236 |||||||| || | || | | | || ||||| || |||| | | Sbjct 4525319 GCACCGTTGGGACCGATGACGGCAACACGCGAAGCGAGCGAGCACT--GCATGGAGATGT 4525262 Query 319237 TC-AAAGATTAGTTTTTCCGTA-CCCGGATACTTGAACCCCACACCGCGTAGCTTCATGA 319294 || || | | || || | || || |||| ||| | || | ||| | || Sbjct 4525261 TCTTGAGCTGCTTCTTGGCGGAGCCGGGGTACTGGAAGTCGACGTTCTTCATCTTGACGA 4525202 Query 319295 TGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGG 319354 ||||||| ||||| | |||||||||| || | |||||||||||||| | || || Sbjct 4525201 TGGCACGCTCCTTGGTCTTGATACCCTCAAGCATACCGGGCTCGGGGAATCTGAACTTGA 4525142 Query 319355 TCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGG 319414 || || || ||| | |||||| || | |||| |||||| |||||||||| Sbjct 4525141 ACTGCGAGTCCTCAAGCGAGTAGTAGGCAGCGGCAGCGGGGACCTTCTTGACGAACTCGG 4525082 Query 319415 ACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGC 319474 | || || || ||| ||| ||||| ||| |||||||||||| || | || Sbjct 4525081 AGAGGTTACCACCGTAACGCTTGAGCTTGTAGTTCTTTTCGTAATGGATGATGTCAGAGC 4525022 Query 319475 AAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGT 319534 | || ||| ||||| || |||||||| || || || | | | | ||| ||| | Sbjct 4525021 AGACGTGGTCAAGGAAACCAGAGTCGTGGGAAACGATGATGGAGGTGACGGTCTTCAAAC 4524962 Query 319535 TGATCAGGTA-TTCAATC-AACCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTCGGCT 319591 | ||||| ||| || | ||| ||||| ||| || | |||||| || |||| Sbjct 4524961 CAAGGAGGTAGTTC--TCGAGCCAGGCAACGTT-GACAACGTCCAAATGGTTAGTAGGCT 4524905 Query 319592 CGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTT 319651 |||| |||||||| | | ||||||| | ||| ||||| ||||| ||||| ||||| | Sbjct 4524904 CGTCCAGAAGCAGAATGTCGGCGTTCATCAACATGGCACGGGCAAGGGCGAGCTTCATCT 4524845 Query 319652 TCCACCCTCCGGAAAG 319667 |||| || || ||||| Sbjct 4524844 TCCAACCACCAGAAAG 4524829 >seq45 Length=2374188 Score = 114 bits (126), Expect = 3e-20 Identities = 274/407 (67%), Gaps = 8/407 (2%) Strand=Plus/Plus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT--AACGAGTT 230294 ||||||||||||| ||| ||| |||||||||| || | || || |||||| | Sbjct 1436234 CCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCT--GACTTTCAGCAACGAGCT 1436291 Query 230295 CATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CTTATGTATTCAAAGCTCC 230353 |||| || ||||| |||||||| || | | || | || | | || | |||| Sbjct 1436292 CATCTCGCGTGACGAAGGTCTCCA-CACCGACTTTGCTTGTCTCCTTTTCTCGCATCTCC 1436350 Query 230354 AGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAA 230413 || ||| |||| ||| ||| ||||| || ||||| || | ||||| Sbjct 1436351 GCAAGCAGCCTCCATCTGAGCGTGTCCTCGGTATCATCCGCGAGGCAGTCGAGATCGAAA 1436410 Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATG 230472 |||||||| | |||| | || ||||| || || ||||||||||| || ||| Sbjct 1436411 AGGAGTTCCTGACCACCGCTTTGCCC-GTCGCTCTGATCGGCATGAACGCGACTCTCATG 1436469 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 | || ||||| || || || || ||||| | | || | || || ||| || | Sbjct 1436470 TGCCAATACATTGAGTTTGTCGCTGACCGTCTCCTCGTCTCGCTCGGCATCGACAAGTTC 1436529 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 ||||| ||| |||||||| | |||||||| | || || || || || ||||||||| Sbjct 1436530 TACAAGGCTACCAACCCCTTCGACTTTATGGACATGATCTCTCTCCAGGGCAAGACCAAC 1436589 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 ||||| || ||||||||| ||| || ||| | ||||||| ||||| Sbjct 1436590 TTCTTTGAGAAGCGTGTCTCTGATTACCAGCGTGCTGGTGTTATGAA 1436636 >seq49 Length=1681262 Score = 95.1 bits (104), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 319452 TTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAAT 319511 |||||| |||| || |||||| || || || ||||| || |||||||| || ||||| Sbjct 850356 TTCGTAGTGGAGGATGTGGGTGCACACGGCATCAAGGAAACCCGAGTCGTGGGATACAAT 850415 Query 319512 CACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACAC 319571 || || | || | | | || | | ||| || || || |||| | ||||| || Sbjct 850416 CAAACAAGTCACATTCGTCTGGCTCACCAGATAGTCTTGCAGCCACTTGACGTTCTGGAC 850475 Query 319572 AGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACG 319631 | | |||||||||||| |||||||| | ||| | | || || ||||| ||||| Sbjct 850476 ATCCAAATGGTTGGTCGGTTCGTCAAGCAACAGAATATCCGCCTTGGAAAGCATGGCACG 850535 Query 319632 TGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTT 319673 || || | || ||||||||||| || ||||| ||| |||| Sbjct 850536 CGCGAGCTCAAGCTTCATTTTCCAGCCACCGGACAGA-TGTT 850576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823335884870