Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1 150 1e-31 >seq1 Length=4845341 Score = 150 bits (166), Expect = 1e-31 Identities = 321/476 (67%), Gaps = 24/476 (5%) Strand=Plus/Minus Query 101639 AGTGTTGGAAACGGTCTAGGAGTTCGCGT--CAACTGCATTTTAAGAGCATCAATGTGAT 101696 || || ||||| |||| || ||||||| || ||| || || ||||| || |||| Sbjct 663116 AGAGTGGGAAAGGGTCGCGG--TTCGCGTTGCAGCTGTTGCTTGAGCGCATCGATATGAT 663059 Query 101697 CTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGA 101756 | ||||||||||| | || || || ||||||| |||||| || ||| | || | ||||| Sbjct 663058 CGACATAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGCTCGAGGTCAGTGA 662999 Query 101757 CATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACC 101816 ||||||| |||||||| || | || | ||| |||||||| || ||||| || | | Sbjct 662998 CATGAGCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAGGGCACACCGAGGC 662939 Query 101817 CCATATC-----AGCTGATCTTTGATACAGTTGACAG----GAAAGCTTTCCATCAC--- 101864 |||| || ||| | | | || ||||| | | ||| || || | Sbjct 662938 CCATGTCGCACGAGCGCTGGTATAAAACGCAAGACAGGCGCGCACGCTCACCCTCGCGAG 662879 Query 101865 ------AGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGT 101918 ||||||||||||||| || |||||||||| |||| |||| | || || | Sbjct 662878 GGGTTGAGACATAAAATTGACAAAAGGCATGACAAGGTGGCAGAGCCATGATGGGGATAT 662819 Query 101919 CTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTAT 101978 | | ||||| || | | | || | | || |||||||| || | || |||| Sbjct 662818 CGGCTGGGTTCCATGCGGATAGAATGATGCGACGGTCAGTAGGGTTGTTTCTAATGGTAT 662759 Query 101979 CAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACA-CCTTTA 102037 |||| | ||| | | |||||| || |||| |||| ||||||| || || | || Sbjct 662758 CAATGATCTGCTGGAGTTGGTCGACGCCTTGTCCTGTATAATC-CGTATCGCAGTCCTTG 662700 Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTC 102093 ||||||||||| || || | |||||| ||||| || || || || ||||| ||||| Sbjct 662699 TATTCTGCTCCAAAGTGGCGCCACTGGAATCCGTAGACGGGGCCGAGATCGCCTTC 662644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250984265299