Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq47 224 1e-53 seq49 84.2 3e-11 >seq47 Length=1968370 Score = 224 bits (248), Expect = 1e-53 Identities = 942/1475 (64%), Gaps = 33/1475 (2%) Strand=Plus/Plus Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGAT 53507 || ||||| || ||||||| | || || | |||| || | ||| | |||||||| | Sbjct 705752 TAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCT--CGGGCGAGTCAAATGGGT 705809 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | ||||| || || || | || | ||||| | |||||| || | ||| | Sbjct 705810 AGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTAGACCGATGGGACGATGAC 705869 Query 53568 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627 | | || ||| |||||||| || | |||||| || || || || ||||| || || | Sbjct 705870 GCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTAGTTGATGTCGATAATCTTGTTTA 705929 Query 53628 GGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TTGTC 53681 ||| | | |||| | ||||| ||||| | || || | |||||||| || | Sbjct 705930 AGTTGCGCGTCACAA---CCTTGACAACATCGTGCAACTTTTGGAAATCAAACACTTCGC 705986 Query 53682 CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 || | ||||| || ||| || | | |||| ||| || || ||||| || | | Sbjct 705987 GATTCTTGACAAAGGTGGGCAAAGCCAGACTGGCCAAATTGCATACAGCTACTTCGTCCG 706046 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | || | | ||||| || || ||||| || |||||||| || || || || | Sbjct 706047 GACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCACTTGATCGTGCCCAAGTTCT 706106 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 | || || || ||||||||| ||||| || || ||||| || ||| || || Sbjct 706107 GCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCATGAAGGGGCCACCTGTCTCGG 706166 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCT 53921 | || | || | || || | ||||| | ||||| | | ||| | | Sbjct 706167 TTTGTGCCTCCAAGATGGCATACCAGAGCTTCTGTGCCTTGACAAC----TTGGCGCGCG 706222 Query 53922 T----TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC 53977 ||| | ||||||| | |||| ||||||| || ||||| || | || Sbjct 706223 CGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTCTCGCCCCACACCTCGTGA 706282 Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037 | || || ||| || || | ||| ||| || || | || | || || ||| Sbjct 706283 AGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACCATTCTCTTCGACACGCTTC 706342 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 54096 || || |||||||| ||||| | || ||| || || || | | | || ||||| || Sbjct 706343 ATGAAAAGATCAGGGATCCATAAGGC-ATAGAACAGGTCACGCGCGCGATTCTCCTCCTT 706401 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || || ||||| || || ||||||| | | ||| | ||||| || || | ||| Sbjct 706402 GCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGGTGCCAGGGCTCGAGGTA 706461 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 |||| | | | || || || ||||| || || ||||| | || | ||| |||||||| Sbjct 706462 GATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACATAGCGAGCCGTGTTATT 706521 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 ||||| | | ||| || | || || ||||| ||||||||| || | ||| || Sbjct 706522 GTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTGGTACCAGCGATGTACGA 706581 Query 54277 TCCACTGGCACGAATATTACTAATTGAT----AGACCTATCCCCCCTGCCATTTTAGAGA 54332 || || || || || | ||| ||||| || || || || | || || | Sbjct 706582 GCCGGAAGCCCGGAT----CTGGTGGATGTTGAGACCGATGCCACCCGCGGTCTTGGAAA 706637 Query 54333 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 || | ||| ||| | || ||||||||||| || || ||| ||| ||||| | | Sbjct 706638 TTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAATCGAATCCTCCTTCATGGTCA 706697 Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 | ||| ||| |||| || ||||| || || || || || | ||| ||| | Sbjct 706698 ACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTGAACAGGGTGGGACTCG 706757 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512 |||| ||||| |||| ||||| | || ||||| ||||| || || || |||||| Sbjct 706758 CGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATGGCGCCTTCGATATCCT 706817 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 ||||| || || || |||||||| ||||||||||| |||| || | |||||| Sbjct 706818 CGCCGTGAATACCCACAGCCACACGCATCAACATGTGCTGCGGTCGCTCGGCAATCTTGC 706877 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 ||| | |||||||| || | ||||| || || || ||||| |||||||| | Sbjct 706878 CGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCGA 706937 Query 54633 AGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA 54692 | || || ||||| || || ||||||| || || || || ||| | | | Sbjct 706938 AATCGCGATCGTAGATGATGGCTGAGTTAAGACGCTCTGCATTCTTCATAATGATAGCGT 706997 Query 54693 TGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATA 54752 || | || | || |||| || || |||| ||||||| |||| | | Sbjct 706998 GAGTGGCATCCGACACAAGAGGAGCTTGCTTATTGGTTTTGGGATTGATATAGCCATGCA 707057 Query 54753 AATCCTTCATCACTTCACTAAATAG-tttttttGTTTCTTTGTGTAGATTTGATACGGCT 54811 | || | ||||| | | | | || || || ||||||||||| || || || ||||| Sbjct 707058 AGTCATCAATCACGT-GCGAGAAAGCCTTCTTCGTTTCTTTGTGCAGGTTGGACACGGCG 707116 Query 54812 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 54871 || | ||| || || |||||||| || ||||| | || || | || ||| | ||| Sbjct 707117 ATACGAGCAGCAAGGATGGCATAGTCAGGATGGCGCGTTGTCATATATGCAGCTGTCTCG 707176 Query 54872 GCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCC 54906 |||| || |||||| ||| || || || || || Sbjct 707177 GCTGCAAGGTTGTCCAGTTCCACGGTAGTCACACC 707211 >seq49 Length=1681262 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/210 (69%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 54350 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 54409 || ||||||||||||||||| ||||| ||||| |||| | | ||| | ||||| || Sbjct 829965 AAGGTATCATAGATGCCCTCGATACTGTCATCTCTCATCTGGACGAGATAGCAGCTGGAG 830024 Query 54410 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469 | || |||| | || || || || || | ||| || | ||||| || || ||||| Sbjct 830025 AGCTGAGGACGGTTTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGTGTGAAATATTTT 830084 Query 54470 TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCC 54525 | || | | | |||| ||||||||||| | || || || || | |||| || Sbjct 830085 TGGGACATGAAACTGTATGTCTCGATAGCCGCATCAATGTCTGTGCCGTGGATG----CC 830140 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGG 54555 | ||||| ||||| | ||||||||| || Sbjct 830141 GAGGGCGACGCGCATGATCATGTGCTGGGG 830170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721236345520