Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 >seq1 Length=4845341 Score = 154 bits (170), Expect = 2e-32 Identities = 424/645 (66%), Gaps = 26/645 (4%) Strand=Plus/Minus Query 145646 TGGGAAAGGGCCGGGGGCTCCTGGT-CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGG 145704 |||||||||| || || || | | |||||| |||| || | || | || | || Sbjct 663112 TGGGAAAGGGTCGCGGT-TCGCGTTGCAGCTGTTGCTTGAGCGCATCGATATGATCGACA 663054 Query 145705 TAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGG 145764 |||| ||| | ||| |||| | |||| || || || ||||||||| | |||| || Sbjct 663053 TAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGCTCGAGGTCAGTGACATGA 662994 Query 145765 GCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATG 145824 |||| |||| | |||||||| | || || |||||||||||||| || || |||||| Sbjct 662993 GCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAGGGCACACCGAGGCCCATG 662934 Query 145825 TCCCCCGAGCGCTGGTACAGCTGGCAGGAGAG---------CTC-CCCGCCCGCC----- 145869 || | |||||||||||| | ||| || || ||| ||| | || Sbjct 662933 TCGCACGAGCGCTGGTATAAAACGCAAGACAGGCGCGCACGCTCACCCTCGCGAGGGGTT 662874 Query 145870 ---ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCC 145926 || || || || || | | || || || ||||| |||||| ||| | || || Sbjct 662873 GAGACATAAAATTGACAAAAGGCATGACAAGGTGGCAGAGCCATGATGGGGATATCGGCT 662814 Query 145927 GGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGG--GTTCCTCTTGATCTCCCCT 145983 |||||||| |||| || | || | | | | | ||| ||| || || | || Sbjct 662813 GGGTTCCATGCGGATAGAATGATGCGACGGTCAGTAGGGTTGTTTCTAATGGTATCAATG 662754 Query 145984 ATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTAC 146043 ||| | | ||| ||||| ||||| || || ||||| || | | ||||| ||| Sbjct 662753 ATCTGCTG---GAGTTGGTCGACGCCTTGTCCTGTATAATCCGTATCGCAGTCCTTGTAT 662697 Query 146044 GCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG 146103 | || || ||||| | ||||||||| ||||||||||| || || || || | | | Sbjct 662696 TCTGCTCCAAAGTGGCGCCACTGGAATCCGTAGACGGGGCCGAGATCGCCTTCTTTGCGG 662637 Query 146104 TGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163 || ||| || | |||| || || || || |||||| | ||||| ||||||| | Sbjct 662636 TGGGACAGTCCACGAGAGTCGAGAAACTCACGTGAACCGTTGCCATCCCAAATCTTGATG 662577 Query 146164 CCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223 |||| | || || | || | || ||| ||| |||||||||| || |||||||| Sbjct 662576 CCCCGCTCGCTCAGGTGATGGCTGTTCGTATCGCCCTTGATGAACCAAAGGAGCTCTTCC 662517 Query 146224 AGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 || || || | | ||||| | || |||||||||| || ||| Sbjct 662516 AGTACGCCACGGAAAAAGACTCGTTTTGTGGTCAGCAATGGAAAC 662472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076438577960