Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq45 161 1e-34 seq23 149 6e-31 seq47 114 1e-20 seq48 89.7 5e-13 >seq45 Length=2374188 Score = 161 bits (178), Expect = 1e-34 Identities = 275/396 (69%), Gaps = 2/396 (1%) Strand=Plus/Plus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| |||| || || || || || ||||| ||||||| || ||| || ||| || Sbjct 1436176 GAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGTTTGCCTCC 1436235 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || |||||||||||||| || || || ||||| || |||||||||||||||||||||||| Sbjct 1436236 ATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAACGAGCTCATC 1436295 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAG 117214 || | ||||| ||||| || ||||||||| ||| | || ||| |||| | || Sbjct 1436296 TCGCGTGACGAAGGTCTCCACACCGACTTTGCTTGTCTCCTTTTCTCGCATCTCCGCAAG 1436355 Query 117215 CGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGC 117274 | || | | ||| ||| | ||| || ||| || |||| ||||| || Sbjct 1436356 CAGCCTCCATCTGAGCGTGTCCTCGGTATCATCCGCGAGGCAGTCGAGATCGAAAAGGAG 1436415 Query 117275 TTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCA 117333 ||||| ||| || |||| || |||| | || | || |||| | |||| || Sbjct 1436416 TTCCTGACCACCGCTTTGCCCGTCGCTCTGATCGGCATGAA-CGCGACTCTCATGTGCCA 1436474 Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393 |||||| ||||| ||||| ||| | || || || ||| | | || |||| |||||| Sbjct 1436475 ATACATTGAGTTTGTCGCTGACCGTCTCCTCGTCTCGCTCGGCATCGACAAGTTCTACAA 1436534 Query 117394 CACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 | ||||||| | ||||||||| || | ||||| Sbjct 1436535 GGCTACCAACCCCTTCGACTTTATGGACATGATCTC 1436570 Score = 104 bits (114), Expect = 2e-17 Identities = 192/281 (68%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||| | || || |||||||| | || ||| | || || || Sbjct 1435665 TGGCAAATGTACAAGAAGGCTGTCGCTTCTTTCTGGACTGCGGAAGAGATCGATCTTTCG 1435724 Query 116699 AAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||||| || ||| |||||| | ||| | | | ||||| | || ||| ||| Sbjct 1435725 AAGGATCAGAACGATTGGGAGAACAAAATGACCAAGGATGAGCGTTACTTTATCTCGCAT 1435784 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||| || || || ||| || ||||||||||||||||| ||||||| || ||| Sbjct 1435785 GTGCTTGCTTTCTTTGCCAGTGCAGATGGCATCGTCAACGAGAACTTGGTCGAACGCTTC 1435844 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || || ||| | | || || ||||||||||||||| |||||| || ||| Sbjct 1435845 TGCAATGAAGTCCAGATCCCTGAAGCCAAGTGCTTCTACGGCTTCCAGATCATGATTGAG 1435904 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||| | ||| | || | ||||| | |||||||| || Sbjct 1435905 AACATTCACGCTGAGACCTATTCTCTTTTGATCGACACTTA 1435945 >seq23 Length=2864373 Score = 149 bits (164), Expect = 6e-31 Identities = 165/217 (76%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| | Sbjct 1571340 AAACATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAAGTCGAGTC 1571399 Query 40746 CACCGAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 ||||| | || | |||| ||||| | || |||| ||||| |||||||| || | Sbjct 1571400 TTCCGACTCTATCGAG--AACG-TCAAGCAGAAGATTCAAGACAAGGAGGGCATTCCTCC 1571456 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 ||| ||||| || ||||||| || ||||| ||| |||| || | ||||||||| ||| Sbjct 1571457 GGATCAGCAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGA 1571516 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||||||| |||| || ||||| ||| Sbjct 1571517 TTACAACATCCAGAAGGAGTCCACTCTCCATCTTGTG 1571553 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || |||||| |||| || || | | Sbjct 1572256 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCT 1572315 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | |||| ||||| | || |||| ||||| ||||||||||| ||||||| Sbjct 1572316 GACTCCATTGAGAACG-TCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCA 1572374 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| || || || |||||||| Sbjct 1572375 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGTACGCTTTCGGACTACAA 1572434 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| | || || ||||| || Sbjct 1572435 CATCCAAAAGGAGTCGACCCTCCATCTTGT 1572464 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| || || | | Sbjct 1571800 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCATCT 1571859 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | ||| | ||| | || || | ||||| ||||| || || |||||||| Sbjct 1571860 GACTCTATCGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 1571919 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 1571920 CAGCGTCTCATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 1571979 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || |||||| | || | ||| || | || || Sbjct 1571980 ATCCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGCCTGCGTGGTGG 1572026 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| ||||| || | || || || | | Sbjct 1572028 ATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACCATTACACTTGAGGTTGAGTCATCT 1572087 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || ||| | | ||| | || || | ||||| ||||| || || ||||||| Sbjct 1572088 GACTCGATTGAAAATG-TGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 1572146 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | |||||||| ||||||||| Sbjct 1572147 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAA 1572206 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| || ||||| ||| Sbjct 1572207 TATCCAGAAGGAGTCCACCCTCCATCTTGTG 1572237 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| || |||||| |||| || || | || Sbjct 1571572 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCC 1571631 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || |||| ||||| | || || | ||||| ||||||||||| ||||||| Sbjct 1571632 GACTCGATTGAGAACG-TCAAGCAGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCA 1571690 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || || | ||||| ||| || ||||| Sbjct 1571691 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGATTACAA 1571750 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| || ||||| |||| || || Sbjct 1571751 CATTCAAAAGGAATCCACCCTTCA 1571774 >seq47 Length=1968370 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || || || | || || ||| | | Sbjct 81064 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACTATTACGTTGGAAGTTGAATCGTCT 81005 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| || ||||| || | || ||| Sbjct 81004 GACACAATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 80945 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| |||||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 80944 CAGCGTCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCGGACTACAAC 80885 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || ||||| | ||||||||| | ||| ||||||| | |||||| Sbjct 80884 ATTCAAAAGGAATCGACGCTGCATTTGGTGCTGCGCTTACGCGGCGGC 80837 >seq48 Length=1814144 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 40786 AAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC 40845 || || ||||| ||| |||||||||| || || || | ||| ||||| ||||| || ||| Sbjct 1641475 AATGAAGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTCGAGGAC 1641534 Query 40846 GAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 | |||||||| ||||||||||| ||||||||| | || || || || ||| Sbjct 1641535 GGCCGCACCCTTTCGGACTACAACATTCAGAAGGAGTCGACCCTTCACCTTGTG 1641588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218884428240