Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 >seq1 Length=4845341 Score = 116 bits (128), Expect = 3e-21 Identities = 314/474 (66%), Gaps = 25/474 (5%) Strand=Plus/Minus Query 97008 TGGGAAAGGCCTGGGAGTTCGCGTA--AGCTGCTCTGTGAGAGCATCAATGTGATTCACA 97065 ||||||||| | | |||||||| ||||| | |||| ||||| || |||| ||| Sbjct 663112 TGGGAAAGGGTCGCG-GTTCGCGTTGCAGCTGTTGCTTGAGCGCATCGATATGATCGACA 663054 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || ||||| | || || | || || | ||| || || || | | ||||||||||| Sbjct 663053 TAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGCTCGAGGTCAGTGACATGA 662994 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 |||||||| || || | || | ||| |||||||| || ||||| || || ||||| Sbjct 662993 GCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAGGGCACACCGAGGCCCATG 662934 Query 97186 TCAGCTGATCTTTGATATAACT-----GACAGGA----AAGCTTTCCATCAC-------- 97228 || || | || ||||| |||||| | ||| || || | Sbjct 662933 TCGCACGAGCGCTGGTATAAAACGCAAGACAGGCGCGCACGCTCACCCTCGCGAGGGGTT 662874 Query 97229 -ACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAG 97287 | |||||||| |||| || ||||||| || |||| ||||| | || | ||| Sbjct 662873 GAGACATAAAATTGACAAAAGGCATGACAAGGTGGCAGAGCCATGATGGGGATATCGGCT 662814 Query 97288 ACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTA-TGGTATTAAT 97346 ||||| || | | | || | | || || ||||| || | || |||||| ||| Sbjct 662813 GGGTTCCATGCGGATAGAATGATGCGACGGTCAGTAGGGTT-GTTTCTAATGGTATCAAT 662755 Query 97347 TATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATT-GTGCTTAAGACCTTGATATT 97405 ||||||| | ||| || ||||||| ||| ||||| || || ||||| |||| Sbjct 662754 GATCTGCTGGAGTTGGTCGACGCCTTGTCCTGTATAATCCGTATCGCAGTCCTTG-TATT 662696 Query 97406 CTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTT 97459 |||||||||| || | ||| |||||||| || || || || || || ||||||| Sbjct 662695 CTGCTCCAAAGTGGCGCCACTGGAATCCGTAGACGGGGCCGAGATCGCCTTCTT 662642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783792904930